Table 1.
Enrichment of known IEGs for genes classified to the peak model in multiple datasets. Enrichment (expressed as odds ratios) and p-values for genes classified across different numbers of time series datasets.
shared datasets | IEGs enrichment |
no. CAGE TSSs (median) | |||||
---|---|---|---|---|---|---|---|
no. genes | no. IEGs | no. CAGE TSSs (across eight datasets) | no. IEG CAGE TSSs (across eight datasets) | OR | p-value | ||
1–8 (all peaking genes) | 8785 | 204 | 102 496 | 913 | — | — | 1 |
2–8 | 5270 | 171 | 71 384 | 853 | 6.3 | 2.2 × 10−16 | 1 |
3–8 | 2882 | 128 | 45 360 | 751 | 5.9 | 2.2 × 10−16 | 2 |
4–8 | 1304 | 86 | 24 616 | 590 | 5.9 | 2.2 × 10−16 | 2 |
5–8 | 507 | 56 | 11 528 | 433 | 7.4 | 2.2 × 10−16 | 3 |
6–8 | 182 | 35 | 4896 | 299 | 10.3 | 2.2 × 10−16 | 3 |
7–8 | 42 | 13 | 1376 | 124 | 12.6 | 2.2 × 10−16 | 4 |
8 | 5 | 2 | 264 | 18 | 8.3 | 4.6 × 10−11 | 5 |