Table 2.
List of genes predicted to be regulated by both FleQ and AmrZ in P. fluorescens F113.
| FUNCTIONAL CLASS | LOCUS | GENE | PRODUCT |
|---|---|---|---|
| c-di-GMP | PSF113_4023 | — | Diguanylate cyclase phosphodiesterase with PAS/PAC sensor |
| CELL WALL | PSF113_0208 | lapA | LapA |
| PSF113_4752 | algD | GDP-mannose 6-dehydrogenase | |
| IRON | PSF113_0933 | fagA | FagA |
| PSF113_1274 | — | TonB-dependent hemin, ferrichrome receptor | |
| PSF113_1322 | — | Iron-regulated protein A precursor | |
| PSF113_1749 | pvdS | PvdS | |
| PSF113_1750 | pvdL | PvdL | |
| PSF113_1837 | pvdD | PvdD | |
| PSF113_1856 | — | Outer membrane pyoverdine eflux protein | |
| PSF113_2258 | — | Outer membrane ferripyoverdine receptor | |
| PSF113_2454 | — | RNA polymerase sigma-70 factor, ECF subfamily | |
| PSF113_2589 | — | Ferrichrome-iron receptor | |
| PSF113_3151 | — | Ferrichrome-iron receptor | |
| PSF113_3220 | — | Heme uptake regulator | |
| PSF113_3734 | — | Ferrichrome-iron receptor | |
| PSF113_4045 | — | Iron-regulated membrane protein | |
| PSF113_4568 | — | Bacterioferritin-associated ferredoxin | |
| PSF113_4845 | — | RNA polymerase sigma-70 factor, ECF subfamily | |
| PSF113_5412 | fiuA | FiuA | |
| PSF113_5657 | fbpA | FbpA | |
| MOTILITY/CHEMOTAXIS | PSF113_0569 | — | Methyl-accepting chemotaxis protein |
| PSF113_0751 | flhD | FlhD | |
| PSF113_2159 | — | Methyl-accepting chemotaxis protein | |
| OTHERS | PSF113_0079c | — | Phage-related replication protein-like protein |
| PSF113_1047 | — | Multicopper oxidase | |
| PSF113_1201 | — | Ferredoxin–NADP( + ) reductase | |
| PSF113_2126 | — | Dihydrodipicolinate synthase | |
| PSF113_2158 | nuoA | NuoA | |
| PSF113_2972 | — | Glycosaminoglycan degradation | |
| PSF113_3889 | — | Zinc carboxypeptidase domain protein | |
| PSF113_3918 | tig | Tig | |
| PSF113_3922 | folD | FolD | |
| PSF113_4083 | — | Sterol desaturase | |
| PSF113_4204 | — | Protein binding | |
| PSF113_4932 | prs | Prs | |
| PSF113_4978 | — | Pentapeptide repeat-containing protein | |
| REGULATION/SIGNAL TRANSDUCTION | PSF113_1200 | — | LysR family transcriptional regulator |
| PSF113_4024 | — | Transcriptional regulator, Cro/CI family | |
| PSF113_4470 | amrZ | AmrZ | |
| UNKNOWN | PSF113_2272 | — | Hypothetical protein |
| PSF113_2273 | — | Reticulocyte binding protein | |
| PSF113_5053 | — | Hypothetical protein | |
| VIRULENCE | PSF113_1855 | — | RHS repeat-associated core domain-containing protein |
| PSF113_2409 | vgrG | VgrG |