Table 2.
The 52 differentially expressed genes in HIV lung cancer.
| Probeset ID | Gene Symbol | Gene Title | p-value | Fold-Change | FDR |
|---|---|---|---|---|---|
| 204304_s_at | PROM1 | prominin 1 | 0.000 | 41.78 | 0.026 |
| 204653_at | TFAP2A | transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha) | 0.003 | 32.14 | 0.104 |
| 228347_at | SIX1 | SIX homeobox 1 | 0.007 | 16.34 | 0.135 |
| 202936_s_at | SOX9 | SRY (sex determining region Y)-box 9 | 0.009 | 12.46 | 0.145 |
| 202935_s_at | SOX9 | SRY (sex determining region Y)-box 9 | 0.006 | 11.77 | 0.125 |
| 1568574_x_at | SPP1 | secreted phosphoprotein 1 | 0.004 | 9.89 | 0.108 |
| 214774_x_at | TOX3 | TOX high mobility group box family member 3 | 0.012 | 9.37 | 0.159 |
| 240303_at | TMC5 | transmembrane channel-like 5 | 0.003 | 8.83 | 0.102 |
| 201291_s_at | TOP2A | topoisomerase (DNA) II alpha 170 kDa | 0.010 | 8.81 | 0.150 |
| 223748_at | SLC4A11 | solute carrier family 4, sodium borate transporter, member 11 | 0.012 | 8.67 | 0.162 |
| 205286_at | TFAP2C | transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma) | 0.002 | 7.75 | 0.090 |
| 1552797_s_at | PROM2 | prominin 2 | 0.002 | 7.70 | 0.089 |
| 228038_at | SOX2 | SRY (sex determining region Y)-box 2 | 0.002 | 7.34 | 0.093 |
| 215108_x_at | TOX3 | TOX high mobility group box family member 3 | 0.025 | 7.08 | 0.204 |
| 219787_s_at | ECT2 | epithelial cell transforming 2 | 0.002 | 6.91 | 0.089 |
| 238689_at | GPR110 | G protein-coupled receptor 110 | 0.030 | 6.89 | 0.216 |
| 215071_s_at | HIST1H2AC | histone cluster 1, H2ac | 0.014 | 6.77 | 0.168 |
| 205817_at | SIX1 | SIX homeobox 1 | 0.000 | 6.76 | 0.053 |
| 201417_at | SOX4 | SRY (sex determining region Y)-box 4 | 0.002 | 6.62 | 0.093 |
| 203744_at | HMGB3 | high mobility group box 3 | 0.002 | 6.28 | 0.093 |
| 230660_at | SERTAD4 | SERTA domain containing 4 | 0.002 | 6.26 | 0.097 |
| 226189_at | ITGB8 | integrin, beta 8 | 0.002 | 6.06 | 0.094 |
| 213424_at | KIAA0895 | KIAA0895 | 0.005 | 6.01 | 0.117 |
| 216623_x_at | TOX3 | TOX high mobility group box family member 3 | 0.009 | 5.80 | 0.145 |
| 222843_at | FIGNL1 | fidgetin-like 1 | 0.013 | 5.67 | 0.163 |
| 201250_s_at | SLC2A1 | solute carrier family 2 (facilitated glucose transporter), member 1 | 0.001 | 5.59 | 0.068 |
| 223062_s_at | PSAT1 | phosphoserine aminotransferase 1 | 0.011 | 5.57 | 0.157 |
| 232151_at | MACC1 | metastasis associated in colon cancer 1 | 0.010 | 5.40 | 0.150 |
| 217901_at | DSG2 | desmoglein 2 | 0.026 | 5.34 | 0.207 |
| 235170_at | ZNF92 | zinc finger protein 92 | 0.015 | 5.03 | 0.171 |
| 203865_s_at | ADARB1 | adenosine deaminase, RNA-specific, B1 | 0.001 | −5.06 | 0.084 |
| 213438_at | NFASC | neurofascin | 0.000 | −5.11 | 0.053 |
| 228268_at | FMO2 | flavin containing monooxygenase 2 (non-functional) | 0.005 | −5.11 | 0.120 |
| 219895_at | TMEM255A | transmembrane protein 255A | 0.001 | −5.13 | 0.065 |
| 212713_at | MFAP4 | microfibrillar-associated protein 4 | 0.004 | −5.22 | 0.115 |
| 225660_at | SEMA6A | sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A | 0.005 | −5.24 | 0.123 |
| 204777_s_at | MAL | mal, T-cell differentiation protein | 0.001 | −5.33 | 0.075 |
| 210038_at | PRKCQ | protein kinase C, theta | 0.012 | −5.35 | 0.160 |
| 219228_at | ZNF331 | zinc finger protein 331 | 0.003 | −5.49 | 0.098 |
| 228850_s_at | SLIT2 | slit homolog 2 (Drosophila) | 0.001 | −5.54 | 0.069 |
| 236029_at | FAT3 | FAT atypical cadherin 3 | 0.001 | −5.56 | 0.083 |
| 1554547_at | FAM13C | family with sequence similarity 13, member C | 0.000 | −5.71 | 0.060 |
| 242290_at | TACC1 | transforming, acidic coiled-coil containing protein 1 | 0.001 | −5.78 | 0.071 |
| 209763_at | CHRDL1 | chordin-like 1 | 0.004 | −5.85 | 0.117 |
| 209220_at | GPC3 | glypican 3 | 0.015 | −6.03 | 0.171 |
| 220170_at | FHL5 | four and a half LIM domains 5 | 0.002 | −6.26 | 0.092 |
| 238332_at | ANKRD29 | ankyrin repeat domain 29 | 0.007 | −6.58 | 0.131 |
| 235849_at | SCARA5 | scavenger receptor class A, member 5 (putative) | 0.001 | −6.66 | 0.080 |
| 243818_at | SFTA1P | surfactant associated 1, pseudogene | 0.001 | −6.72 | 0.069 |
| 209612_s_at | ADH1B | alcohol dehydrogenase 1B (class I), beta polypeptide | 0.006 | −6.73 | 0.124 |
| 204719_at | ABCA8 | ATP-binding cassette, sub-family A (ABC1), member 8 | 0.001 | −6.83 | 0.081 |
| 201539_s_at | FHL1 | four and a half LIM domains 1 | 0.002 | −6.89 | 0.088 |
| 217504_at | ABCA6 | ATP-binding cassette, sub-family A (ABC1), member 6 | 0.003 | −6.91 | 0.103 |
| 209613_s_at | ADH1B | alcohol dehydrogenase 1B (class I), beta polypeptide | 0.001 | −7.11 | 0.070 |
| 211726_s_at | FMO2 | flavin containing monooxygenase 2 | 0.000 | −7.24 | 0.050 |
| 229641_at | CCBE1 | collagen and calcium binding EGF domains 1 | 0.002 | −7.51 | 0.097 |
| 224061_at | INMT | indolethylamine N-methyltransferase | 0.005 | −7.54 | 0.119 |
| 225895_at | SYNPO2 | synaptopodin 2 | 0.002 | −7.83 | 0.092 |