Table 5.

Long repeat sequence in the Q. acutissima chloroplast genome.

ID	Repeat Start I	Type	Size (bp)	Repeat Start 2	Mismatch (bp)	E-Value	Gene	Region
1	6831	F	46	6853	0	1.47 × 10−18	IGS	LSC
2	11,847	R	31	11,847	0	1.58 × 10−9	IGS	LSC
3	6818	R	26	6818	0	1.62 × 10−6	rps16	LSC
4	47,242	F	25	47,264	0	6.49 × 10−6	IGS	LSC
5	6831	F	24	6875	0	2.59 × 10−5	IGS	LSC
6	115,801	F	24	135,722	0	2.59 × 10−5	ycf1	IRA; IRB
7	113,545	F	23	113,576	0	1.04 × 10−4	IGS	IRA
8	118,844	R	23	118,844	0	1.04 × 10−4	IGS	IRA
9	137,948	F	23	137,979	0	1.04 × 10−4	IGS	IRB
10	11,371	F	22	41,193	0	4.15 × 10−4	trnG-GCC (exon), trnG-GCC	LSC
11	9536	F	21	39,849	0	1.66 × 10−3	trnS-UGA, trnS-GCU	LSC
12	10,319	F	21	18,682	0	1.66 × 10−3	IGS	LSC
13	117,049	R	21	117,049	0	1.66 × 10−3	ndhF	SSC
14	36,478	F	20	53,719	0	6.64 × 10−3	IGS	LSC
15	53,720	F	20	130,481	0	6.64 × 10−3	IGS	LSC; SSC
16	55,907	R	20	55,907	0	6.64 × 10−3	atpB	LSC
17	57,271	F	20	142,064	0	6.64 × 10−3	trnV-UAC, trnA-UGC	LSC; IRB
18	105,331	F	20	105,349	0	6.64 × 10−3	IGS	IRA
19	146,178	F	20	146,196	0	6.64 × 10−3	IGS	IRB
20	4930	F	19	36,476	0	2.66 × 10−2	IGS	LSC
21	8915	R	19	8915	0	2.66 × 10−2	IGS	LSC
22	13,541	R	19	76,642	0	2.66 × 10−2	atpA	LSC
23	18,685	R	19	118,842	0	2.66 × 10−2	clpP	LSC; SSC
24	21,297	R	19	54,183	0	2.66 × 10−2	rpoC2	LSC
25	36,479	F	19	130,481	0	2.66 × 10−2	IGS	LSC; SSC
26	39,957	R	19	39,957	0	2.66 × 10−2	IGS	LSC
27	62,040	R	19	62,040	0	2.66 × 10−2	IGS	LSC
28	64,751	R	19	64,751	0	2.66 × 10−2	IGS	LSC
29	69,026	R	19	69,026	0	2.66 × 10−2	IGS	LSC
30	71,277	R	19	71,277	0	2.66 × 10−2	IGS	LSC
31	72,561	R	19	72,561	0	2.66 × 10−2	IGS	LSC
32	4430	R	18	4430	0	1.06 × 10−1	IGS	LSC
33	4437	F	18	24,828	0	1.06 × 10−1	rpoC1 (intron)	SSC
34	4935	F	18	52,105	0	1.06 × 10−1	IGS	LSC
35	4938	F	18	118,695	0	1.06 × 10−1	IGS	LSC
36	6813	F	18	6847	0	1.06 × 10−1	IGS	LSC
37	6813	F	18	6869	0	1.06 × 10−1	IGS	LSC
38	6817	F	18	127,945	0	1.06 × 10−1	ndhA (intron)	LSC
39	7369	F	18	7387	0	1.06 × 10−1	IGS	LSC; SSC
40	7465	R	18	7465	0	1.06 × 10−1	IGS	LSC; SSC
41	8589	R	18	34,768	0	1.06 × 10−1	IGS	LSC; SSC
42	9996	R	18	9996	0	1.06 × 10−1	IGS	LSC
43	10,283	F	18	31,730	0	1.06 × 10−1	IGS	LSC
44	10,322	R	18	118,843	0	1.06 × 10−1	IGS	LSC; IRA
45	10,548	F	18	133,365	0	1.06 × 10−1	ycf1	LSC
46	31,728	F	18	125,951	0	1.06 × 10−1	IGS	LSC
47	39,812	F	18	40,698	0	1.06 × 10−1	trnS -UGA	LSC; SSC
48	40,022	R	18	69,093	0	1.06 × 10−1	IGS	LSC
49	40,700	F	18	123,827	0	1.06 × 10−1	IGS	LSC
50	43,446	F	18	45,670	0	1.06 × 10−1	psaB	SSC
51	40,022	R	18	69,093	0	1.06 × 10−1	IGS	LSC
52	40,700	F	18	123,827	0	1.06 × 10−1	IGS	LSC
53	43,446	F	18	45,670	0	1.06 × 10−1	psaB, psaA	LSC

F: forward; I: inverted; IGS: intergenic space.