Table 6.
Simple sequence repeats (SSRs) in the Q. acutissima chloroplast genome.
| ID | Repeat Motif | Length (bp) | Start | End | Region | Gene | ID | Repeat Motif | Length (bp) | Start | End | Region | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | (A)10 | 9 | 1809 | 1818 | LSC | 34 | (T)10 | 9 | 55,713 | 55,722 | LSC | ||
| 2 | (C)14 | 13 | 4433 | 4446 | LSC | 35 | (T)10 | 9 | 59,591 | 59,600 | LSC | ||
| 3 | (T)11 | 10 | 4697 | 4707 | LSC | 36 | (T)10 | 9 | 60,063 | 60,072 | LSC | ||
| 4 | (A)10 | 9 | 4939 | 4948 | LSC | trnK-UUU | 37 | (T)10 | 9 | 64,092 | 64,101 | LSC | accD |
| 5 | (T)11 | 10 | 7001 | 7011 | LSC | 38 | (A)11 | 10 | 64,266 | 64,276 | LSC | ||
| 6 | (T)10 | 9 | 7746 | 7755 | LSC | 39 | (AT)7 | 13 | 64,570 | 64,583 | LSC | ||
| 7 | (A)10 | 9 | 8174 | 8183 | LSC | 40 | (T)14 | 13 | 64,945 | 64,958 | LSC | ||
| 8 | (A)12 | 11 | 8590 | 8601 | LSC | psbK | 41 | (T)13 | 12 | 66,170 | 66,182 | LSC | |
| 9 | (A)11 | 10 | 8920 | 8930 | LSC | 42 | (T)11 | 10 | 68,616 | 68,626 | LSC | petA | |
| 10 | (A)10 | 9 | 9465 | 9474 | LSC | 43 | (T)11 | 10 | 70,730 | 70,740 | LSC | ||
| 11 | (A)10 | 9 | 10,161 | 10,170 | LSC | 44 | (T)11 | 10 | 71,398 | 71,408 | LSC | ||
| 12 | (A)11 | 10 | 13,547 | 13,557 | LSC | 45 | (T)11 | 10 | 73,389 | 73,399 | LSC | ||
| 13 | (T)12 | 11 | 15,345 | 15,356 | LSC | 46 | (AT)6 | 11 | 77,274 | 77,285 | LSC | clpP | |
| 14 | (T)10 | 9 | 16,160 | 16,169 | LSC | 47 | (TA)7 | 13 | 82,928 | 82,941 | LSC | petD | |
| 15 | (A)12 | 11 | 18,692 | 18,703 | LSC | rpoC2 | 48 | (A)11 | 10 | 85,781 | 85,791 | LSC | |
| 16 | (T)12 | 11 | 21,295 | 21,306 | LSC | rpoC2 | 49 | (T)10 | 9 | 86,100 | 86,109 | LSC | |
| 17 | (T)14 | 13 | 25,299 | 25,312 | LSC | 50 | (T)10 | 9 | 88,820 | 88,829 | LSC | ||
| 18 | (T)10 | 9 | 28,563 | 28,572 | LSC | 51 | (T)11 | 10 | 114,070 | 114,080 | IRA | ||
| 19 | (T)10 | 9 | 29,651 | 29,660 | LSC | 52 | (T)12 | 11 | 118,582 | 118,593 | SSC | ||
| 20 | (T)11 | 10 | 30,275 | 30,285 | LSC | 53 | (A)11 | 10 | 118,695 | 118,705 | SSC | ||
| 21 | (C)14 | 13 | 30,428 | 30,441 | LSC | 54 | (T)11 | 10 | 119,000 | 119,010 | SSC | ||
| 22 | (T)11 | 10 | 31,731 | 31,741 | LSC | 55 | (A)10 | 9 | 119,794 | 119,803 | SSC | ||
| 23 | (A)10 | 9 | 32,094 | 32,103 | LSC | 56 | (T)11 | 10 | 122,199 | 122,209 | SSC | ndhD | |
| 24 | (A)10 | 9 | 33,986 | 33,995 | LSC | 57 | (A)10 | 9 | 122,546 | 122,555 | SSC | ||
| 25 | (A)13 | 12 | 34,775 | 34,787 | LSC | 58 | (AT)8 | 15 | 123,832 | 123,847 | SSC | ||
| 26 | (A)10 | 9 | 34,955 | 34,964 | LSC | 59 | (T)11 | 10 | 125,812 | 125,822 | SSC | ||
| 27 | (A)10 | 9 | 36,485 | 36,494 | LSC | 60 | (T)11 | 10 | 125,954 | 125,964 | SSC | ||
| 28 | (AT)6 | 11 | 39,819 | 39,830 | LSC | 61 | (T)11 | 10 | 130,262 | 130,272 | SSC | ||
| 29 | (T)10 | 9 | 41,238 | 41,247 | LSC | trnfM-CAU | 62 | (A)10 | 9 | 130,487 | 130,496 | SSC | |
| 30 | (T)11 | 10 | 53,217 | 53,227 | LSC | 63 | (T)10 | 9 | 133,465 | 133,474 | SSC | ycf1 | |
| 31 | (A)10 | 9 | 53,726 | 53,735 | LSC | 64 | (T)13 | 12 | 134,042 | 134,054 | SSC | ycf1 | |
| 32 | (T)15 | 14 | 54,110 | 54,124 | LSC | 65 | (A)11 | 10 | 137,468 | 137,478 | SSC | ||
| 33 | (A)11 | 10 | 54,990 | 55,000 | LSC |