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. 2018 Aug 19;19(8):2450. doi: 10.3390/ijms19082450

Table 1.

List of all abiotic stress-related genes, with references, and their putative interactions with cytokinin according to the expression profile analysis outlined in Figure 2, Figure 3 and Figure 4. Genes in bold indicate profile similarities >85% to cytokinin-related genes, and numbers indicate the number of detected co-expressed cytokinin signalling/metabolism genes.

Gene Name AGI Code UniProt Protein Name Significant Co-Expression with Cytokinin Signalling/Metabolism Genes References
NITROGEN
NPF6.3 AT1G12110 Protein NRT1/PTR FAMILY 6.3 [157]
NRT2.1 AT1G08090 High-affinity nitrate transporter 2.1 [158]
NRT2.2 AT1G08100 High-affinity nitrate transporter 2.2 [157]
NRT2.4 AT5G60770 High affinity nitrate transporter 2.4 [159,160]
NRT2.5 AT1G12940 High affinity nitrate transporter 2.5 [13,157,161]
AMT1-1 AT4G13510 Ammonium transporter 1 member 1 [157]
AMT1-5 AT3G24290 Putative ammonium transporter 1 member 5 [161,162]
GDH2 AT5G07440 Glutamate dehydrogenase 2 [157]
GSH3 AT3G03910 Probable glutamate dehydrogenase 3 [157]
GLN2 AT5G35630 Glutamine synthetase 2/4 [157,158]
GLU2 AT2G41220 Ferredoxin-dependent glutamate synthase 2 [163]
NIA1 AT1G77760 Nitrate reductase [NADH] 1 [13,158]
NIA2 AT1G37130 Nitrate reductase [NADH] 2 [157]
NIR1 AT2G15620 Ferredoxin–nitrite reductase 1/0 [13,158]
UMP1 AT5G40850 Urophorphyrin methylase 1 [13,157,158]
GLN1-1 AT5G37600 Glutamine synthetase cytosolic isozyme 1-1 [159,164]
GLN1-4 AT5G16570 Glutamine synthetase cytosolic isozyme 1-4 0/1 [157,164]
At3g16150 AT3G16150 Probable isoaspartyl peptidase/l-asparaginase 2 [157,159]
ASN2 AT5G65010 Asparagine synthetase [glutamine-hydrolyzing] 2 [22,157]
ASN3 AT5G10240 Asparagine synthetase [glutamine-hydrolyzing] 3 1/1 [165]
At5g13110 AT5G13110 Glucose-6-phosphate 1-dehydrogenase 2 2/1 [157,158]
At1g24280 AT1G24280 Glucose-6-phosphate 1-dehydrogenase 3 1/2 [22,158]
UPS1 AT2G03590 Ureide permease 1 [159]
AT4G39795 AT4G39795 Uncharacterized protein [159]
RFNR1 AT4G05390 Ferredoxin–NADP reductase [14,158]
RFNR2 AT1G30510 Ferredoxin–NADP reductase 1/1 [158]
GSTF14 AT1G49860 Glutathione S-transferase F14 [158]
BT5 AT4G37610 BTB/POZ and TAZ domain-containing protein 5 [158]
CCA1 AT2G46830 Protein CCA1 [157]
TGA1 AT5G65210 Transcription factor TGA1 [166]
TGA4 AT5G10030 Transcription factor TGA4 [166]
NLP3 AT4G38340 Protein NLP3 1/0 [167]
NLP5 AT1G76350 Protein NLP5 [167]
NLP7 AT4G24020 Protein NLP7 [167]
HHO1 AT3G25790 Transcription factor HHO1 0/1 [158,160]
HRS1 AT1G13300 Transcription factor HRS1 [158,160]
HHO3 AT1G25550 Transcription factor HHO3 [22,158,160]
LBD37 AT5G67420 LOB domain-containing protein 37 [14,158,168]
LBD38 AT3G49940 LOB domain-containing protein 38 [14,158,168]
LBD39 AT4G37540 LOB domain-containing protein 39 0/1 [158,168]
CIPK3 AT2G26980 CBL-interacting serine/threonine-protein kinase 3 [158]
CIPK13 AT2G34180 CBL-interacting serine/threonine-protein kinase 13 [157]
AO AT5G14760 l-aspartate oxidase [158]
PHOSPHORUS
PHO1 AT3G23430 Phosphate transporter PHO1 0/2 [38]
PHO1-H1 AT1G68740 Phosphate transporter PHO1 homolog 1 0/1 [169]
PHF1 AT3G52190 SEC12-like protein 1 0/3 [169]
PHT1-1 AT5G43350 Inorganic phosphate transporter 1-1 [170,171]
PHT1-2 AT5G43370 Probable inorganic phosphate transporter 1-2 [171,172]
PHT1-3 AT5G43360 Probable inorganic phosphate transporter 1-3 1/1 [38,171]
PHT1-4 AT2G38940 Inorganic phosphate transporter 1-4 1/0 [171,172]
PHT1-5 AT2G32830 Probable inorganic phosphate transporter 1-5 1/0 [170,171]
PHT1-6 AT5G43340 Probable inorganic phosphate transporter 1-6 0/1 [172]
PHT1-7 AT3G54700 Probable inorganic phosphate transporter 1-7 [173]
PHT1-8 AT1G20860 Probable inorganic phosphate transporter 1-8 [172,173]
PHT1-9 AT1G76430 Probable inorganic phosphate transporter 1-9 1/1 [172,173]
PHT2-1 AT3G26570 Inorganic phosphate transporter 2-1 [170,172]
SPX1 AT5G20150 SPX domain-containing protein 1 [169,174]
SPX2 AT2G26660 SPX domain-containing protein 2 0/2 [174]
SPX3 AT2G45130 SPX domain-containing protein 3 [38]
IPS1 AT3G09922 INDUCED BY PHOSPHATE STARVATION1 [169,174]
F12E4_330 AT5G03545 At5g03545 [169]
ACP5 AT5G27200 Acyl carrier protein 5 [38]
RNS1 AT2G02990 Ribonuclease 1 [169,170]
SQD2 AT5G01220 Sulfoquinovosyl transferase SQD2 [169]
PAP10 AT2G16430 Purple acid phosphatase 10 [38]
PAP6 AT1G56360 Purple acid phosphatase 6 [38]
At4g19770 AT4G19770 Glycosyl hydrolase family protein with chitinase insertion domain-containing protein [38]
PUB35 AT4G25160 U-box domain-containing protein 35 [38]
GDPD3 AT5G43300 Glycerophosphodiester phosphodiesterase GDPD3 [38]
ETC3 AT4G01060 MYB-like transcription factor ETC3 [38]
SULPHUR
SULTR1;1 AT4G08620 Sulfate transporter 1.1 [175,176]
SULTR2;1 AT5G10180 Sulfate transporter 2.1 [175,176]
SULTR4;1 AT5G13550 Sulfate transporter 4.1 [177,178]
SULTR4;2 AT3G12520 Probable sulfate transporter 4.2 [178,179,180,181]
APS3 AT4G14680 ATP-sulfurylase 3 [176,178]
APR1 AT4G04610 5′-adenylylsulfate reductase 1 [176,178]
APR2 AT1G62180 5′-adenylylsulfate reductase 2 0/1 [178]
APR3 AT4G21990 5′-adenylylsulfate reductase 3 0/1 [178,180]
SAT4 AT4G35640 Serine acetyltransferase 4 [181,182]
BGLU28 AT2G44460 Beta-glucosidase 28 [179,180]
BGLU30 AT3G60140 Beta-glucosidase 30 [180,182]
SDI1 AT5G48850 Protein SULFUR DEFICIENCY-INDUCED 1 [178,179]
SDI2 AT1G04770 Protein SULFUR DEFICIENCY-INDUCED 2 [176,178]
SHM7 AT1G36370 Serine hydroxymethyltransferase 7 [178,180]
GGCT2;1 AT5G26220 Gamma-glutamylcyclotransferase 2-1 [178,180,182]
LSU1 AT3G49580 Protein RESPONSE TO LOW SULFUR 1 [178,180]
LSU2 AT5G24660 Protein RESPONSE TO LOW SULFUR 2 [178,180,182]
At3g05400 AT3G05400 Sugar transporter ERD6-like 12 [180,182]
At4g31330 AT4G31330 Protein of unknown function 0/2 [180,182]
SIP1-2 AT5G18290 Probable aquaporin SIP1-2 2/1 [180]
At5g40670 AT5G40670 Cystinosin homolog [180]
At1g75290 AT1G75290 NAD [180]
NSP5 AT5G48180 Nitrile-specifier protein 5 [180]
AVT6C AT3G56200 Amino acid transporter AVT6C [178,180]
NFYA2 AT3G05690 Nuclear transcription factor Y subunit A-2 [180]
BZIP1 AT5G49450 Basic leucine zipper 1 [180]
RVE2 AT5G37260 Homeodomain-like superfamily protein [180]
POTASSIUM
POT5 AT4G13420 Potassium transporter 5 [182,183]
POT4 AT3G02050 Potassium transporter 4 2/2 [183]
AKT1 AT2G26650 Potassium channel AKT1 [184,185]
RBOHC AT5G51060 Respiratory burst oxidase homolog protein C [183]
CIPK23 AT1G30270 CBL-interacting serine/threonine-protein kinase 23 [183,186]
TGG1 AT5G26000 Myrosinase 1 [182]
TGG2 AT5G25980 Myrosinase 2 [182]
POT6 AT1G70300 Potassium transporter 6 [187]
POT8 AT5G14880 Potassium transporter 8 1/2 [184,187]
KEA5 AT5G51710 K+ efflux antiporter 5 0/2 [183]
KAT3 AT4G32650 Potassium channel KAT3 [184]
SKOR AT3G02850 Potassium channel SKOR [184,188,189]
AKT2 AT4G22200 Potassium channel AKT2/3 0/1 [189]
POT3 AT4G23640 Potassium transporter 3 2/0 [190]
POT7 AT5G09400 Potassium transporter 7 2/3 [191]
CBL1 AT4G17615 Calcineurin B-like protein 1 [189]
CBL9 AT5G47100 Calcineurin B-like protein 9 0/1 [189]
CBL10 AT4G33000 Calcineurin B-like protein 10 [183]
TCH3 AT2G41100 Calcium-binding EF hand family protein [192]
ERF73 AT1G72360 Integrase-type DNA-binding superfamily protein [183]
IRON
AXX17_At1g47400 AT1G47400 Uncharacterized protein [182,193]
At1g47395 AT1G47395 At1g47390 [182]
AT2G14247 AT2G14247 Expressed protein [182]
At1g13609 AT1G13609 Defensin-like [182]
IRT1 AT4G19690 Fe2+ transport protein 1 [182,193,194]
F17A17.6 AT3G07720 AT3g07720/F17A17_6 [182,193,194]
MTPA2 AT3G58810 Metal tolerance protein A2 [193,194]
MJM20.4 AT3G12900 2-oxoglutarate [193,194]
F21F14.100 AT3G61930 Uncharacterized protein At3g61930/F21F14_100 [193,194]
COPT2 AT3G46900 Copper transporter 2 [193,194]
CYP82C4 AT4G31940 Cytochrome P450 82C4 [193]
GLP4 AT1G09560 Germin-like protein subfamily 2 member 1 [193,194]
F17A9.4 AT3G06890 At3g06890 [193,194]
UGT72E1 AT3G50740 UDP-glycosyltransferase 72E1 [193,194]
ORG3 AT3G56980 Transcription factor ORG3 [182,193,194]
MYB72 AT1G56160 Transcription factor MYB72 [193,194]
MTPC3 AT3G58060 Putative metal tolerance protein C3 [193,194]
FIT AT2G28160 Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR [194,195]
BHLH47 AT3G47640 Transcription factor bHLH47 2/1 [193,195]
BHLH101 AT5G04150 Transcription factor bHLH101 [182,193]
NAS4 AT1G56430 Probable nicotianamine synthase 4 [182,193]
OPT3 AT4G16370 Oligopeptide transporter 3 [195,196]
CGLD27 AT5G67370 Protein CONSERVED IN THE GREEN LINEAGE AND DIATOMS 27 [182]
FRO2 AT1G01580 Ferric reduction oxidase 2 [182]
FRO3 AT1G23020 Ferric reduction oxidase 3 [193,195]
AHA2 AT4G30190 Plasma membrane ATPase [195]
NRAMP4 AT5G67330 Metal transporter Nramp4 1/1 [193,195]
FER1 AT5G01600 Ferritin-1 [193,194]
ABCI8 AT4G04770 UPF0051 protein ABCI8 [193,194]
At2g36885 AT2G36885 Translation initiation factor 0/1 [193,194,195]
APXS AT4G08390 Stromal ascorbate peroxidase 1/1 [193,194]
LAC7 AT3G09220 Laccase-7 [193,194,195]
IRT3 AT1G60960 Fe2+ transport protein 3, chloroplastic 1/1 [193]
At4g08300 AT4G08300 WAT1-related protein At4g08300 [182]
FRO4 AT5G23980 Ferric reduction oxidase 4 [185]
BORON
BOR1 AT2G47160 Boron transporter 1 [197]
BOR4 AT1G15460 Boron transporter 4 1/1 [198]
TEMPERATURE/DROUGHT
RD29A AT5G52310 Low-temperature-induced 78 kDa protein [141,199,200]
KIN1 AT5G15960 Stress-induced protein KIN1 [201,202]
KIN2 AT5G15970 Stress-induced protein KIN2 [203,204]
COR15A AT2G42540 Protein COLD-REGULATED 15A [200,201,202]
COR47 AT1G20440 Dehydrin COR47 [201,202]
ERD10 AT1G20450 Dehydrin ERD10 [201,202]
ERD7 AT2G17840 Protein EARLY-RESPONSIVE TO DEHYDRATION 7 [201,202,205]
At1g30790 AT1G30790 F-box protein At1g30790 0/2 [205]
MKK2 AT4G29810 Mitogen-activated protein kinase kinase 2 [206]
RAB18 AT5G66400 Dehydrin Rab18 [207,208,209]
LTI65/RD29B AT5G52300 Low-temperature-induced 65 kDa protein [129,199,200]
RD22 AT5G25610 BURP domain protein RD22 [207,209]
HOS1 AT2G39810 E3 ubiquitin-protein ligase HOS1 4/3 [203,210]
DREB1B AT4G25490 Dehydration-responsive element-binding protein 1B [201,202]
DREB1C AT4G25470 Dehydration-responsive element-binding protein 1C [201,202,209]
DREB1A AT4G25480 Dehydration-responsive element-binding protein 1A [201,202]
RABC1 AT1G43890 Ras-related protein RABC1 0/2 [202]
CLPD AT5G51070 Chaperone protein ClpD [209,211]
SWEET15 AT5G13170 Bidirectional sugar transporter SWEET15 [40,209]
P5CSA AT2G39800 Delta-1-pyrroline-5-carboxylate synthase A [40,209]
ABI1 AT4G26080 Protein phosphatase 2C 56 [209]
DREB2A AT5G05410 Dehydration-responsive element-binding protein 2A [209,212]
NCED3 AT3G14440 9-cis-epoxycarotenoid dioxygenase NCED3 [200,209]
ABF3 AT4G34000 ABSCISIC ACID-INSENSITIVE 5-like protein 6 [209,213]
PP2CA AT3G11410 Protein phosphatase 2C 37 2/2 [200,209,214]
PXG3/RD20 AT2G33380 Probable peroxygenase 3 [200,209,211]
LEA7 AT1G52690 Late embryogenesis abundant protein 7 [209,215]
LEA29 AT3G15670 Late embryogenesis abundant protein 29 [40]
At3g17520 AT3G17520 Late embryogenesis abundant protein [208,209]
NAC072 AT4G27410 NAC domain-containing protein 72 [208,209]
MBF1C AT3G24500 Multiprotein-bridging factor 1c [216,217]
HSFA2 AT2G26150 Heat stress transcription factor A-2 [217,218,219]
HSA32 AT4G21320 Protein HEAT-STRESS-ASSOCIATED 32 [216,217,218]
CLPB1 AT1G74310 Chaperone protein ClpB1 [216,217,218]
CLPB3 AT5G15450 Chaperone protein ClpB3 [216,218]
HSFB2A AT5G62020 Heat stress transcription factor B-2a [216,219]
HSFA7A AT3G51910 Heat stress transcription factor A-7a [217,218,219]
HSP90-1 AT5G52640 Heat shock protein 90-1 [216,217,218]
HSP90-2 AT5G56030 Heat shock protein 90-2 [216,217]
At2g20560 AT2G20560 At2g20560/T13C7.15 [216,217,218]
HSFB1 AT4G36990 Heat stress transcription factor B-1 [216,217,218]
HSP23.6 AT4G25200 23.6 kDa heat shock protein [217,218]
HSP18.1 AT5G59720 18.1 kDa class I heat shock protein [217,218]
HSP17.4B AT1G54050 17.4 kDa class III heat shock protein [216,217]
MED37C AT3G12580 Probable mediator of RNA polymerase II transcription subunit 37c [217,220]
HSP70-5 AT1G16030 Heat shock 70 kDa protein 5 [217,218,220]
HSP70-10 AT5G09590 Heat shock 70 kDa protein 10 [216,217]
GOLS1 AT2G47180 Galactinol synthase 1 [216,217,218]
APX2 AT3G09640 L-ascorbate peroxidase 2 [217,218]
ERDJ3A AT3G08970 DnaJ protein ERDJ3A [216,217]
HSP90-6 AT3G07770 Heat shock protein 90-6 2/0 [216,217]
HSP90-4 AT5G56000 Heat shock protein 90-4 [216,217]
HSP70-8 AT2G32120 Heat shock 70 kDa protein 8 [216,217]
MED37D AT5G02490 Probable mediator of RNA polymerase II transcription subunit 37c [216,217]
HSP70-3 AT3G09440 Heat shock 70 kDa protein 3 [216,217]
HSP70-15 AT1G79920 Heat shock 70 kDa protein 15 0/2 [216,217]
HSP90-5 AT2G04030 Heat shock protein 90-5 0/1 [216,217]
XENOBIOTIC STRESS
GSH1 AT4G23100 Glutamate–cysteine ligase [221,222]
GSH2 AT5G27380 Glutathione synthetase [221,222]
PCS1 AT5G44070 Glutathione gamma-glutamylcysteinyltransferase 1 [221,222]
MAN3 AT3G10890 Mannan endo-1 [223]
ZAT6 AT5G04340 Zinc finger protein ZAT6 [223]
PCR1 AT1G14880 Protein PLANT CADMIUM RESISTANCE 1 [224]
HMA3 AT4G30120 Putative inactive cadmium/zinc-transporting ATPase HMA3 [225,226]
HMA4 AT2G19110 Putative cadmium/zinc-transporting ATPase HMA4 2/1 [227]
HSFA4A AT4G18880 Heat stress transcription factor A-4a [228]
FC1 AT5G26030 Ferrochelatase-1 [222]
HMT-1 AT3G25900 Homocysteine S-methyltransferase 1 2/2 [229]
MT1A AT1G07600 Metallothionein-like protein 1A 1/4 [230]
NRAMP5 AT4G18790 Metal transporter Nramp5 2/2 [226,231]
ABCG36 AT1G59870 ABC transporter G family member 36 [232]
ABCB25 AT5G58270 ABC transporter B family member 25 4/3 [233]
ABCC1 AT1G30400 ABC transporter C family member 1 4/2 [226,234,235]
ABCC2 AT2G34660 ABC transporter C family member 2 10/7 [226,234,235]
HAC1 AT2G21045 Protein HIGH ARSENIC CONTENT 1 1/1 [236]
ALMT1 AT1G08430 Aluminum-activated malate transporter 1 [237,238]
ALS3 AT2G37330 Protein ALUMINUM SENSITIVE 3 2/4 [237,239]
STOP1 AT1G34370 Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 0/1 [237,239]
CYP81D11 AT3G28740 Cytochrome P450 81D11 [240,241,242,243]
CYP710A1 AT2G34500 Cytochrome P450 710A1 [82,244,245]
CYP81D8 AT4G37370 Cytochrome P450 [81,243,244,245]
UGT73B2 AT4G34135 UDP-glucosyl transferase 73B2 [241,242,244]
UGT73B3 AT4G34131 UDP-glycosyltransferase 73B3 [242,244]
UGT73B4 AT2G15490 UDP-glycosyltransferase 73B4 [241,242,244]
UGT73C1 AT2G36750 UDP-glycosyltransferase 73C1 [241]
GSTU3 AT2G29470 Glutathione S-transferase U3 [241,244]
GSTU10 AT1G74590 Glutathione S-transferase U10 [82,243,246]
GSTU19 AT1G78380 Glutathione S-transferase U19 2/3 [243,247]
GSTU24 AT1G17170 Glutathione S-transferase U24 [240,241,242,243]
GSTU25 AT1G17180 Glutathione S-transferase U25 [241,242,243,244]
GSTU26 AT1G17190 Glutathione S-transferase U26 [248]
GGT4 AT4G29210 Glutathione hydrolase 3 1/0 [249]
ABCC3 AT3G13080 ABC transporter C family member 3 [244]
ABCI21 AT5G44110 ABC transporter I family member 21 [242,243]
DTX1 AT2G04040 Protein DETOXIFICATION 1 [243,245]
DTX3 AT2G04050 Protein DETOXIFICATION 3 [243,245]
DTX4 AT2G04070 Protein DETOXIFICATION 4 [241,245]
CYP710A2 AT2G34490 Cytochrome P450 710A2 [82]
DHAR2 AT1G75270 Glutathione S-transferase DHAR2 1/0 [243,244]
DHAR3 AT5G16710 Glutathione S-transferase DHAR3 2/0 [243]
GSTU4 AT2G29460 Glutathione S-transferase U4 [241,244]
UGT74F2 AT2G43820 UDP-glycosyltransferase 74F2 [244,246]
UGT73C6 AT2G36790 UDP-glycosyltransferase 73C6 0/1 [241,245]
UGT74E2 AT1G05680 UDP-glycosyltransferase 74E2 [241,245]
UGT73B5 AT2G15480 UDP-glycosyltransferase 73B5 [241,244]
UGT75B1 AT1G05560 UDP-glycosyltransferase 75B1 [241,244]
CYP81F2 AT5G57220 Cytochrome P450 81F2 [241]
CYP87A2 AT1G12740 Photosynthetic NDH subunit of lumenal location 5 1/1 [240]
GSTF7 AT1G02920 Glutathione S-transferase F7 [243]
GSTF6 AT1G02930 Glutathione S-transferase F6 [243,246]
ABCB15 AT3G28345 ABC transporter B family member 15 [242]