Table 2.

List of Differentially Regulated Proteins as Determined by LIMMA Analysis With P < .01.

Uniprot ID	Short PFS (Early)	Long PFS (Late)	Log 2 FC Late/Early	P	Protein Name
P12277	5	5	−3.41	.0047	Creatine kinase B-type
O14558	6	5	−1.99	.0039	Heat shock protein beta-6
P98088	4	3	−1.89	.0069	Mucin-5 AC
P21397	6	6	−1.68	.0038	Monoamine oxidase type A
P36871	5	5	−1.4	.0094	Phosphoglucomutase-1
P00352	6	6	−1.37	.0012	Aldehyde dehydrogenase family 1 member A1
Q9P0M6	5	4	−1.08	.0055	Core histone macro-H2A.2
P38606	6	6	0.78	.0098	V-type proton ATPase catalytic subunit A
P61160	6	6	0.87	.0073	Actin-related protein 2
P11413	6	6	0.94	.0092	Glucose-6-phosphate 1-dehydrogenase
P60953	6	6	0.98	.0073	Cell division control protein 42 homolog
O60506	5	4	1.05	.0068	Heterogeneous nuclear ribonucleoprotein Q
Q16658	6	6	1.06	.0099	Fascin
O60234	6	5	1.25	.0069	Glia maturation factor gamma
P16144	2	4	1.45	.0072	Integrin beta-4
P20292	5	6	1.61	.0004	Arachidonate 5-lipoxygenase-activating protein
P04196	4	2	2.57	.0061	Histidine-rich glycoprotein
Q96SQ9	3	2	2.78	.0099	Cytochrome P450 2S1

Key: 7 proteins including ALDH1A1 and MAOA were up-regulated in the short PFS cohort while 11 proteins were up-regulated in the prolonged PFS cohort.