Table 3.
Outlier SNPs from Eigenvector 1 of EigenGWAS analysis
SNP | Locus ID | P | Position | Gene | Distance (bp) |
---|---|---|---|---|---|
203s1 | 105 | 6 × 10−26 | Chr27:1229392 | MAP3K14 | In gene |
7826s2 | 4142 | 2 × 10−13 | Chr24:1583716 | DLAT | In gene |
7622s1 | 4065 | 1 × 10−11 | Chr27:1534267 | GPATCH8 | 965 |
5483s1 | 2876 | 4 × 10−11 | – | – | – |
8418s1 | 4348 | 1 × 10−10 | Chr14:7479033 | SNX29 | In gene |
2982s2 | 1469 | 2 × 10−10 | – | – | – |
2041s1 | 997 | 1 × 10−9 | – | – | – |
174s1 | 85 | 2 × 10−8 | Chr27:1376142 | MYO1D | In gene |
5752s1 | 3039 | 3 × 10−8 | Chr3:105320550 | – | – |
8322s2 | 4296 | 5 × 10−8 | Chr5:58018667 | AP5M1 | 2868 |
7216s3 | 3844 | 7 × 10−8 | – | – | – |
4131s1 | 2115 | 9 × 10−8 | Chr20:15447166 | PREX1 | In gene |
2473s1 | 1217 | 1 × 10−7 | Chr20:15293405 | CSE1L | In gene |
6932s2 | 3689 | 1 × 10−7 | Chr3:96985953 | – | – |
7180s1 | 3825 | 2 × 10−7 | Chr4A:5912527 | – | – |
1728s2 | 849 | 6 × 10−7 | – | – | – |
6765s1 | 3602 | 7 × 10−7 | Chr4A:6655419 | VSIG4 | In gene |
4138s2 | 2120 | 2 × 10−6 | Chr20:3241763 | GSS | 4 |
1723s1 | 846 | 2 × 10−6 | Chr12:3914968 | – | – |
1541s1 | 760 | 6 × 10−6 | Chr2:25304006 | VPS50 | In gene |
2273s1 | 1117 | 1 × 10−5 | Chr1A:56816580 | – | – |
The nearest gene within 10,000 bp of the SNP is identified.