TABLE 8.

Whole-genome sequencing metadata

Macaque	ST	WGSa technology	Isolate date	Genome size (bp)	Total no. of reads	No. of contigs	N50	Avg reference coverageb	No. of genes annotated	NCBI accession no.
1	55	PacBio	Aug. 2011	3,011,796	83,861	2	17,828	257.05	2,941	QFYO00000000
	55	PacBio	May 2014	3,024,067	92,116	2	13,530	211.55	2,946	QFYN00000000
	55	PacBio	March 2015	3,037,432	81,501	3	16,398	226.35	2,995	QFYM00000000
2	4	PacBio	Aug. 2011	2,983,064	88,233	2	15,312	239.31	2,881	MCFW00000000
	4	PacBio	May 2016	2,986,755	65,930	5	7,003	74.75	2,907	QFYL00000000
3	55	PacBio	Aug. 2011	3,015,699	86,533	3	24,224	338.83	2,939	MCFV00000000
	48	Illumina	Aug. 2016	2,806,131	1,807,478	19	364,769	142.19	2,670	QFYJ00000000
4	48	PacBio	Nov. 2013	2,919,427	95,407	2	15,106	269.22	2,786	QFYK00000000
6	48	PacBio	March 2017	2,920,131	86,807	2	16,627	260.61	2,775	QFYI00000000
11	4	PacBio	Aug 2011	3,044,487	87,196	3	24,838	327.48	2,962	MCFU00000000

^aWGS, whole-genome sequencing.

^bDefined as bases/genome size (fold coverage).