TABLE 2.
AMR profiles and genotypes of C. jejuni and C. coli from TAU and SIB at different time points
| Farm | Species | AMR profilea | Time (weeks)b | STc |
|---|---|---|---|---|
| TAU | C. coli | T | 3, 4, 5, 6, 7, 8, 9 | 1068 |
| C. coli | TQ | 4 | 1068 | |
| C. jejuni | T | 5, 6, 8 | 1698 | |
| SIB | C. coli | TSEKQG | 2, 3 | 1604 |
| 5, 7 | 1149 | |||
| 8 | 9064 | |||
| C. coli | TQ | 5 | 1161 | |
| 8, 9 | 8094 | |||
| C. coli | TSKQ | 8 | 889 | |
| 9 | 8094 | |||
| C. coli | TSKQG | 5, 6, 7 | NDd | |
| C. jejuni | TSKQG | 2, 5, 6, 7 | 1839 |
a
Abbreviations are as indicated in the legend to Fig. 1.
b
Boldface indicates weeks from which isolates were genotyped by MLST.
c
Boldface indicates a novel ST.
d
ND, not determined because isolates could not be resuscitated.