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. 2018 Aug 31;84(18):e01083-18. doi: 10.1128/AEM.01083-18

TABLE 1.

Summary of taxa assimilating a 13C-labeled substrate after a 1-week period

Taxon 13C-enriched organic matter (heterotrophic assay)
13C-labeled bicarbonate (autotrophic assay)
Avg bootstrapped A median valuea of OTUs No. of OTUs that did not overlap zero No. of sequences (% of total) Avg bootstrapped A median value of OTUs No. of OTUs that did not overlap zero No. of sequences (% of total)
Bacterial group
    AC1 0.174 1 191 (0.02)
    Acidobacteria 0.147 53 53,330 (4.29) 0.090 66 142,863 (8.36)
    Actinobacteria 0.141 43 37,912 (3.05) 0.090 118 127,476 (7.46)
    Aminicenantes 0.150 1 304 (0.02) 0.083 1 128 (0.01)
    Armatimonadetes 0.095 1 193 (0.01)
    Bacteroidetes 0.133 101 119,842 (9.6) 0.073 33 37,426 (2.19)
    Chlorobi 0.132 3 1,063 (0.09) 0.076 2 459 (0.03)
    Chloroflexi 0.125 108 122,862 (9.9) 0.090 90 116,303 (6.80)
    Cloacimonetes 0.164 1 371 (0.03)
    Cyanobacteria 0.086 2 11,716 (0.94)
    Elusimicrobia 0.172 3 650 (0.05)
    Firmicutes 0.130 25 89,386 (7.19) 0.120 6 3,125 (0.18)
    Gemmatimonadetes 0.157 13 7,543 (0.61) 0.073 11 16,020 (0.94)
    Ignavibacteria 0.136 10 12,469 (1.00) 0.085 4 2,069 (0.12)
    Modulibacteria (KSB3) 0.099 1 192 (0.02)
    Latescibacteria 0.170 5 2,202 (0.18) 0.089 10 6,282 (0.37)
    Nitrospinae 0.160 2 6,309 (0.51) 0.083 2 5,335 (0.31)
    Nitrospirae 0.146 18 17,753 (1.43) 0.082 11 22,886 (1.34)
    Omnitrophica 0.113 2 1,922 (0.15)
    Planctomycetes 0.120 35 17,644 (1.42) 0.079 80 43,712 (2.56)
    Proteobacteria 0.145 298 684,269 (55) 0.092 309 1,079,407 (63)
    Spirochaetes 0.134 6 1,682 (0.14)
    Verrucomicrobia 0.138 89 51,909 (4.18) 0.087 52 105,543 (6.17)
Archaeal group
    Bathyarchaeota 0.118 1 862 (0.07)
    Euryarchaeota 0.087 1 307 (0.02)
    Thaumarchaeota 0.108 2 526 (0.04)
    Woesearchaeota (DHVEG-6) 0.076 1 277 (0.02)
Total 1,242,909 1,709,811
a

Median of bootstrapped excess atom fraction (EAF) values (see reference 14).