Table 1.
List of genes in Stemonaceae chloroplast genomes.
| Category of Genes | Groups of Genes | Names of Genes |
|---|---|---|
| Self-replication | rRNA genes | rrn16(×2), rrn23(×2), rrn4.5(×2), rrn 5(×2) |
| tRNA genes | trnA-UGC *(×2), trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnfM-CAU, trnG-GCC, trnG-UCC *, trnH-GUG(×2), trnI-CAU(×2), trnI-GAU *(×2), trnK-UUU *, trnL-CAA(×2), trnL-UAA *, trnL-UAG, trnM-CAU, trnN-GUU(×2), trnP-UGG, trnQ-UUG, trnR-ACG(×2), trnR-UCU, trnS-GCU, trnS-GGA, trnS-UGA, trnT-GGU, trnT-UGU, trnV-GAC(×2), trnV-UAC *, trnW-CCA, trnY-FUA | |
| Small subunit of ribosome | rps2, rps3, rps4, rps7(×2), rps8, rps11, rps12 **(×2), rps14, rps15, rps16 *, rps18, rps19(×2) | |
| Large subunit of ribosome | rpl2 *(×2), rpl14, rpl16 *, rpl20, rpl22(×2), rpl23(×2), rpl32, rpl33, rpl36 | |
| DNA-dependent RNA polymerase | rpoA, rpoB, rpoC1 *, rpoC2 | |
| Genes for photosynthesis | Subunit of NADH-dehydrogenase | ndhA *, ndhB *(×2), ndhC, ndhD, ndhE, ndhF, ndhG, ndhI, ndhH, ndhJ, hdhK |
| Subunit of Photosystem 1 | psaA, psaB, psaC, psaI, psaJ, ycf3 ** | |
| Subunit of Photosystem 2 | psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT | |
| Subunits of cytochrome b/f complex | petA, petB *, petD *, petG, petL, petN | |
| Subunits of ATP synthase | atpA, atpB, atpE, atpF *, atpH, atpI | |
| Large subunit of rubisco | rbcL | |
| Other genes | Maturase | matK, |
| Protease | clpP ** | |
| Envelope membrane protein | cemA | |
| Subunit of Acetyl-CoA-carboxylase | accD | |
| c-type cytochrome synthesis gene | ccsA | |
| Translation initiation factor IF-1 | infA | |
| Genes of unknown function | Open reading frames (ORF, ycf) | ycf1, ycf2(×2), ycf4, lhbA |
* Gene with one intron, ** gene with two introns; (×2) indicates genes duplicated in the IR region.