| ABA | Abscisic acid |
| ABF | ABA responsive element binding factor |
| AFC | Average fold change |
| AHK | Arabidopsis histidine kinase |
| AHP | Arabidopsis histidine phosphotransfer protein |
| ARF | Auxin response factor |
| APC/C | Anaphase-promoting complex/cyclosome |
| ASA | Anthranilate synthase |
| AUX1 | AUXIN1 |
| BLASTX | Basic local alignment search tool X |
| CDC | Cell division cycle |
| CDK | Cyclin-dependent kinase |
| CKX | Cytokinin oxidases/dehydrogenases |
| CRE1 | Cytokinin response 1 |
| DEGs | Differentially expressed genes |
| EBF | EIN3-binding F-box protein |
| FDR | False discovery rate |
| FG | Female gametophyte |
| FL | Fertile line |
| FNM | Free nuclear mitosis |
| FNMM | Free nuclear mitosis of megagametophyte |
| GID | Glucose-induced degradation protein |
| GO | Gene ontology |
| ICK | CDK inhibitory protein |
| JAZ | Jasmonate ZIM domain-containing protein |
| LAX | LIKE-AUX1 |
| MCM | Minichrome maintenance |
| MMC | Megaspore mother cell |
| MPK6 | Mitogen-activated protein kinase 6 |
| NCED | 9-cis-Epoxycarotenoid dioxygenase |
| NR | Non-redundant |
| KEGG | Kyoto Encyclopedia of Genes and Genomes |
| PAT | Polar auxin transport |
| PP2C | Protein phosphatase 2C |
| PYR | Pyrabactin resistance 1 protein |
| PYL | PYR1-Like protein |
| qRT-PCR | Quantitative real-time PCR |
| RPKM | Reads per kb per million reads |
| SAUR | Small auxin-up RNA |
| SL | Sterile line |
| STEM | Short Time-series Expression Miner |