Table 1.
Artificial datasets used for the evaluation of graph aligner tools
| Abbr. | Organism | Reference ID | Genome | Repeated | Sequencing | Cov. | Read |
|---|---|---|---|---|---|---|---|
| size | 31-mers (%) | platform | length | ||||
| S1 | Escherichia coli K-12 DH10B | NC010473 | 4.5 Mbp | 3.2 | Illumina HiSeq 2500 | 25 | 150 bp |
| S2 | Escherichia coli K-12 DH10B | NC010473 | 4.5 Mbp | 3.2 | Illumina HiSeq 2000 | 50 | 100 bp |
| S3 | Homo sapiens Chr. 21 | HG19 | 45.2 Mbp | 4.3 | Illumina HiSeq 2500 | 25 | 150 bp |
| S4 | Homo sapiens Chr. 21 | HG19 | 45.2 Mbp | 4.3 | Illumina HiSeq 2000 | 50 | 100 bp |
| S5 | Drosophila melanogaster | Release 5 | 116.4 Mbp | 1.1 | Illumina HiSeq 2500 | 25 | 150 bp |
| S6 | Drosophila melanogaster | Release 5 | 116.4 Mbp | 1.1 | Illumina HiSeq 2000 | 50 | 100 bp |