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. 2018 Sep 3;18:447. doi: 10.1186/s12879-018-3351-y

Table 4.

The cumulative HGDI with successive addition of each MIRU-VNTR locus

VNTR locus No. of pattern No. of cluster No. of cluster isolates No. of isolates in each cluster cluster rate (%) HGDI (cumulative)
1 Qub11b
2 mtub21 56 38 650 2–165 0.916 0.890
3 miru26 158 69 579 2–122 0.763 0.940
4 qub26 258 78 487 2–80 0.612 0.970
5 mtub-04 318 80 430 2–59 0.524 0.982
6 miru-10 356 84 396 2–49 0.467 0.988
7 ETRF 389 77 356 2–45 0.418 0.990
8 ETRE 420 72 320 2–42 0.371 0.992
9 miru-39 444 76 300 2–35 0.335 0.994
10 ETRA 466 72 274 2–28 0.302 0.996
11 miru-40 492 69 245 2–23 0.263 0.997
12 qub4156 507 63 224 2–21 0.241 0.997
13 mtub-38 512 62 218 2–21 0.234 0.997
14 mtub-39 524 55 199 2–21 0.216 0.997
15 mtub-30 528 53 193 2–20 0.210 0.997
16 ETRB 531 51 188 2–19 0.205 0.998
17 miru-27 536 50 182 2–18 0.198 0.998
18 miru-16 542 51 177 2–16 0.189 0.998
19 ETRD 548 46 166 2–15 0.180 0.998
20 ETRC 555 43 156 2–15 0.169 0.998
21 miru-23 562 42 146 2–15 0.156 0.998
22 mtub29 565 39 142 2–15 0.154 0.998
23 vntr49 565 39 142 2–15 0.154 0.998
24 miru-20 566 39 141 2–15 0.153 0.998
25 miru-2 566 39 141 2–15 0.153 0.998
26 miru-24 567 38 139 2–15 0.151 0.998