Table 4.
VNTR locus | No. of pattern | No. of cluster | No. of cluster isolates | No. of isolates in each cluster | cluster rate (%) | HGDI (cumulative) | |
---|---|---|---|---|---|---|---|
1 | Qub11b | ||||||
2 | mtub21 | 56 | 38 | 650 | 2–165 | 0.916 | 0.890 |
3 | miru26 | 158 | 69 | 579 | 2–122 | 0.763 | 0.940 |
4 | qub26 | 258 | 78 | 487 | 2–80 | 0.612 | 0.970 |
5 | mtub-04 | 318 | 80 | 430 | 2–59 | 0.524 | 0.982 |
6 | miru-10 | 356 | 84 | 396 | 2–49 | 0.467 | 0.988 |
7 | ETRF | 389 | 77 | 356 | 2–45 | 0.418 | 0.990 |
8 | ETRE | 420 | 72 | 320 | 2–42 | 0.371 | 0.992 |
9 | miru-39 | 444 | 76 | 300 | 2–35 | 0.335 | 0.994 |
10 | ETRA | 466 | 72 | 274 | 2–28 | 0.302 | 0.996 |
11 | miru-40 | 492 | 69 | 245 | 2–23 | 0.263 | 0.997 |
12 | qub4156 | 507 | 63 | 224 | 2–21 | 0.241 | 0.997 |
13 | mtub-38 | 512 | 62 | 218 | 2–21 | 0.234 | 0.997 |
14 | mtub-39 | 524 | 55 | 199 | 2–21 | 0.216 | 0.997 |
15 | mtub-30 | 528 | 53 | 193 | 2–20 | 0.210 | 0.997 |
16 | ETRB | 531 | 51 | 188 | 2–19 | 0.205 | 0.998 |
17 | miru-27 | 536 | 50 | 182 | 2–18 | 0.198 | 0.998 |
18 | miru-16 | 542 | 51 | 177 | 2–16 | 0.189 | 0.998 |
19 | ETRD | 548 | 46 | 166 | 2–15 | 0.180 | 0.998 |
20 | ETRC | 555 | 43 | 156 | 2–15 | 0.169 | 0.998 |
21 | miru-23 | 562 | 42 | 146 | 2–15 | 0.156 | 0.998 |
22 | mtub29 | 565 | 39 | 142 | 2–15 | 0.154 | 0.998 |
23 | vntr49 | 565 | 39 | 142 | 2–15 | 0.154 | 0.998 |
24 | miru-20 | 566 | 39 | 141 | 2–15 | 0.153 | 0.998 |
25 | miru-2 | 566 | 39 | 141 | 2–15 | 0.153 | 0.998 |
26 | miru-24 | 567 | 38 | 139 | 2–15 | 0.151 | 0.998 |