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. 2018 Sep 3;150(9):1317–1331. doi: 10.1085/jgp.201811993

Table 1. Potential propofol binding sites in NaChBac identified by molecular docking.

Binding site NaChBac template structure (PDB) Compounda Occupancy Lowest energy score
% kcal/mol
Selectivity filter NavAb (3RVY) PFL 51.2 −6.20
4FPFL 70.2 −6.19
NavAb (5VB2) PFL 99.6 −6.76
4FPFL 90.6 −6.53
NavAb (5VB8) PFL 98.4 −6.71
4FPFL 81.6 −6.58
NavMs (5HVX) PFL 100.0 −6.92
4FPFL 98.2 −6.64
Activation gate NavAb (5VB8) PFL 1.6 −6.56
4FPFL 17.6 −6.44
NavRh (4DXW) PFL 19.7 −6.52
4FPFL 33.8 −6.50
Voltage sensing domain NavAb (3RVY) PFL 39.6 −6.61
4FPFL 24.0 −6.72
Intersubunit extracellular interface NavRh (4DXW) PFL 63.5 −6.49
4FPFL 52.5 −6.53
a

PFL, propofol; 4FPFL, 4-fluoropropofol.