Table 1. Potential propofol binding sites in NaChBac identified by molecular docking.
| Binding site | NaChBac template structure (PDB) | Compounda | Occupancy | Lowest energy score |
|---|---|---|---|---|
| % | kcal/mol | |||
| Selectivity filter | NavAb (3RVY) | PFL | 51.2 | −6.20 |
| 4FPFL | 70.2 | −6.19 | ||
| NavAb (5VB2) | PFL | 99.6 | −6.76 | |
| 4FPFL | 90.6 | −6.53 | ||
| NavAb (5VB8) | PFL | 98.4 | −6.71 | |
| 4FPFL | 81.6 | −6.58 | ||
| NavMs (5HVX) | PFL | 100.0 | −6.92 | |
| 4FPFL | 98.2 | −6.64 | ||
| Activation gate | NavAb (5VB8) | PFL | 1.6 | −6.56 |
| 4FPFL | 17.6 | −6.44 | ||
| NavRh (4DXW) | PFL | 19.7 | −6.52 | |
| 4FPFL | 33.8 | −6.50 | ||
| Voltage sensing domain | NavAb (3RVY) | PFL | 39.6 | −6.61 |
| 4FPFL | 24.0 | −6.72 | ||
| Intersubunit extracellular interface | NavRh (4DXW) | PFL | 63.5 | −6.49 |
| 4FPFL | 52.5 | −6.53 |
PFL, propofol; 4FPFL, 4-fluoropropofol.