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. 2018 Sep 1;30(3):193–205. doi: 10.5792/ksrr.17.067

Table 1.

Primers and Polymerase Chain Reaction Conditions

Gene Forward and reverse primer Product length (bp) Annealing temperature (°C) MgCl2 concentration (g/L) Accession ID (NCBI)
Adipogenic markers
LPL F: 5′-CTGCAAATGAGACACTTTCTC-3′ 276 51 1.0 NM_000237
R: 5′-CATGTCCTGGCAGTCTCTGA-3′
PPARG F: 5′-GCTGTTATGGGTGAAACTCTG-3′ 350 51 1.0 NM_005037
R: 5′-TAAGGTGGAGATGCAGGCTC-3′ NM_015869
NM_138711
NM_138712
Osteogenic marker
ALPL F: 5′-TGGAGCTTCAGAAGCTCAACACCA-3′ 454 51 1.0 NM_000478
R: 5′-ATCTCGTTGTCTGAGTACCAGTCC-3′ NM_001127501
NM_001177520
Chondrogenic markers
ACAN F: 5′-GCCTTGAGCAGTTCACCTTC-3′ 392 54 1.0 NM_001135
R: 5′-CTCTTCTACGGGGACAGCAG-3′ NM_013227
BGN F: 5′-AGTAGAGGCAGCTGCAGCCAC-3′ 424 53 1.0 NM_001711
R: 5′-GTGTCTGGACAGGTGCGGCAGC-3′
COL2A1 F: 5′-GGTATTGCTGGCTTCAAAGG-3′ 387 58 1.0 NM_001844
R: 5′-AGGACGACCATCTTCACCAG-3′ NM_033150
COMP F: 5′-CAGGACGACTTTGATGCAGA-3′ 312 54 1.0 NM_000095
R: 5′-AGGCTGGAGCTGTCCTGGTA-3′
FMOD F: 5′-ACCAGTGATAAGGTGGGCAG-3′ 368 54 1.0 NM_002023
R: 5′-AAGTAGCTATCGGGGACGGT-3′
Hypertrophic marker
COL10A1 F: 5′-GGTATTGCTGGCTTCAAAGG-3′ 468 54 1.0 NM_000493
R: 5′-AGGACGACCATCTTCACCAG-3′
Housekeeping gene
EEF1A1 F: 5′-AGGTGATTATCCTGAACCATCC-3′ 235 54 1.0 NM_001402
R: 5′-AAAGGTGGATAGTCTGAGAAGC-3′

Forward and reverse primers to amplify specific gene products along with their associated product lengths (lAmplicon), the annealing temperature (TAnneal), the concentrations of MgCl2 used in the reaction mixture (cMgCl), and the accession ID at the Gene database of the National Center for Biotechnology Information (NCBI).

LPL: lipoprotein lipase, PPARG: peroxisome proliferator-activated receptor γ, ALPL: alkaline phosphatase, tissue-nonspecific isozyme, ACAN: aggrecan core protein, BGN: byglican, COL2A1: collagen alpha-1(II) chain, COMP: cartilage oligomeric matrix protein, FMOD: fibromodulin, COL10A1: collagen alpha-1(X) chain, EEF1A1: expression analyses, elongation factor 1-alpha 1.