Table 1.
Gene | Forward and reverse primer | Product length (bp) | Annealing temperature (°C) | MgCl2 concentration (g/L) | Accession ID (NCBI) |
---|---|---|---|---|---|
Adipogenic markers | |||||
LPL | F: 5′-CTGCAAATGAGACACTTTCTC-3′ | 276 | 51 | 1.0 | NM_000237 |
R: 5′-CATGTCCTGGCAGTCTCTGA-3′ | |||||
PPARG | F: 5′-GCTGTTATGGGTGAAACTCTG-3′ | 350 | 51 | 1.0 | NM_005037 |
R: 5′-TAAGGTGGAGATGCAGGCTC-3′ | NM_015869 | ||||
NM_138711 | |||||
NM_138712 | |||||
Osteogenic marker | |||||
ALPL | F: 5′-TGGAGCTTCAGAAGCTCAACACCA-3′ | 454 | 51 | 1.0 | NM_000478 |
R: 5′-ATCTCGTTGTCTGAGTACCAGTCC-3′ | NM_001127501 | ||||
NM_001177520 | |||||
Chondrogenic markers | |||||
ACAN | F: 5′-GCCTTGAGCAGTTCACCTTC-3′ | 392 | 54 | 1.0 | NM_001135 |
R: 5′-CTCTTCTACGGGGACAGCAG-3′ | NM_013227 | ||||
BGN | F: 5′-AGTAGAGGCAGCTGCAGCCAC-3′ | 424 | 53 | 1.0 | NM_001711 |
R: 5′-GTGTCTGGACAGGTGCGGCAGC-3′ | |||||
COL2A1 | F: 5′-GGTATTGCTGGCTTCAAAGG-3′ | 387 | 58 | 1.0 | NM_001844 |
R: 5′-AGGACGACCATCTTCACCAG-3′ | NM_033150 | ||||
COMP | F: 5′-CAGGACGACTTTGATGCAGA-3′ | 312 | 54 | 1.0 | NM_000095 |
R: 5′-AGGCTGGAGCTGTCCTGGTA-3′ | |||||
FMOD | F: 5′-ACCAGTGATAAGGTGGGCAG-3′ | 368 | 54 | 1.0 | NM_002023 |
R: 5′-AAGTAGCTATCGGGGACGGT-3′ | |||||
Hypertrophic marker | |||||
COL10A1 | F: 5′-GGTATTGCTGGCTTCAAAGG-3′ | 468 | 54 | 1.0 | NM_000493 |
R: 5′-AGGACGACCATCTTCACCAG-3′ | |||||
Housekeeping gene | |||||
EEF1A1 | F: 5′-AGGTGATTATCCTGAACCATCC-3′ | 235 | 54 | 1.0 | NM_001402 |
R: 5′-AAAGGTGGATAGTCTGAGAAGC-3′ |
Forward and reverse primers to amplify specific gene products along with their associated product lengths (lAmplicon), the annealing temperature (TAnneal), the concentrations of MgCl2 used in the reaction mixture (cMgCl), and the accession ID at the Gene database of the National Center for Biotechnology Information (NCBI).
LPL: lipoprotein lipase, PPARG: peroxisome proliferator-activated receptor γ, ALPL: alkaline phosphatase, tissue-nonspecific isozyme, ACAN: aggrecan core protein, BGN: byglican, COL2A1: collagen alpha-1(II) chain, COMP: cartilage oligomeric matrix protein, FMOD: fibromodulin, COL10A1: collagen alpha-1(X) chain, EEF1A1: expression analyses, elongation factor 1-alpha 1.