Table 1.
Biological samples used in this study.
| Section | Sample name | Cultivar | Sampling location | Origin | Technique | Sampling date | GaTLV | GAPDH |
|---|---|---|---|---|---|---|---|---|
| 1st observation | EVC53 | Gewurztraminer | Alsace-Colmar-INRA-open field | Colmar, Fr | Illumina 2*150 | 05/09/2013 | ✓ | Na |
| EVC42 | Gewurztraminer | Alsace-Colmar-INRA-open field | Colmar, Fr | Illumina 2*150 | 05/09/2013 | ✓ | Na | |
| EVC60 | Gewurztraminer | Alsace-Colmar-INRA-open field | Colmar, Fr | Illumina 2*150 | 05/09/2013 | ✓ | Na | |
| EVC56 | Gewurztraminer | Alsace-Colmar-INRA-open field | Colmar, Fr | Illumina 2*150 | 05/09/2013 | ✓ | Na | |
| Epidemiology linked to timing | V. sylvestris | Na | Alsace-Colmar-INRA-open field | Grau du roi, Fr | RT-PCR | 18/05/2011 | ✗ | NT |
| V. rupestris | Na | Alsace-Colmar-INRA-open field | Nd | RT-PCR | 17/06/2008 | ✗ | NT | |
| V. candicans | Na | Alsace-Colmar-INRA-open field | Nd | RT-PCR | 17/06/2008 | ✗ | NT | |
| V. ishikari | Na | Alsace-Colmar-INRA-open field | Nd | RT-PCR | 17/06/2008 | ✗ | NT | |
| V. davidii | Na | Alsace-Colmar-INRA-open field | Nd | RT-PCR | 17/06/2008 | ✗ | NT | |
| V. amurensis | Na | Alsace-Colmar-INRA-open field | Nd | RT-PCR | 17/06/2008 | ✗ | NT | |
| A. japonica | Na | Alsace-Colmar-INRA-open field | Nd | RT-PCR | 17/06/2008 | ✗ | NT | |
| A. cordata | Na | Alsace-Colmar-INRA-open field | Nd | RT-PCR | 17/06/2008 | ✗ | NT | |
| A. peunculata | Na | Alsace-Colmar-INRA-open field | Nd | RT-PCR | 17/06/2008 | ✗ | NT | |
| Y276 | Otscha Bala | Alsace-Colmar-INRA-open field | Ouzbekistan | RT-PCR | 06/08/2012 | ✗ | NT | |
| 95-184 | Grand Noir | Alsace-Colmar-INRA-open field | Volos, Greece | RT-PCR | 11/09/2014 | ✓ | NT | |
| P119 | Zirock | Alsace-Colmar-INRA-open field | Nd | RT-PCR | 12/09/2014 | ✓ | NT | |
| C1200 | Chardonnay | Alsace-Colmar-INRA-open field | Nd | RT-PCR | 22/09/2014 | ✓ | NT | |
| N37 | Cabernet franc | Alsace-Colmar-INRA-open field | Nd | RT-PCR | 22/09/2014 | ✓ | NT | |
| 96-29 | Lambrusco Lambo | Alsace-Colmar-INRA-open field | Italy | RT-PCR | 26/09/2012 | ✓ | NT | |
| Z170 | Ruby Cabernet | Alsace-Colmar-INRA-open field | France | RT-PCR | 26/09/2012 | ✓ | NT | |
| 96-60 | Nebbiolo | Alsace-Colmar-INRA-open field | Italy | RT-PCR | 26/09/2012 | ✓ | NT | |
| Y245 | Karasakis | Alsace-Colmar-INRA-open field | Turquie | RT-PCR | 27/09/2012 | ✓ | NT | |
| 96-42 | Nebbiolo | Alsace-Colmar-INRA-open field | Italy | RT-PCR | 02/10/2012 | ✓ | NT | |
| Y259 | Lutea | Alsace-Colmar-INRA-open field | Italy | RT-PCR | 02/10/2012 | ✓ | NT | |
| Y270 | Muscat d′Istambul | Alsace-Colmar-INRA-open field | Israël | RT-PCR | 02/10/2012 | ✓ | NT | |
| E4 | Redglobe | Alsace-Colmar-INRA-open field | IFV-ENTAV | RT-PCR | 24/10/2012 | ✓ | NT | |
| Y206 | Chaouch rose | Alsace-Colmar-INRA-open field | Turkey | RT-PCR | 25/10/2011 | ✗ | NT | |
| BB2-6 | Touriga Francesa | Alsace-Colmar-INRA-open field | Portugal | RT-PCR | 25/10/2011 | ✗ | NT | |
| 95-151 | Alphonse Lavallée | Alsace-Colmar-INRA-open field | IFV-ENTAV | RT-PCR | 29/10/2012 | ✓ | NT | |
| T113 | Chatus | Alsace-Colmar-INRA-open field | Bordelais | RT-PCR | 09/11/2011 | ✓ | NT | |
| Timing confirmation | EVC53 | Gewurztraminer | Alsace-Colmar-INRA-open field | Colmar, Fr | RT-PCR | 20/06/2016 | ✗ | NT |
| EVC53 | Gewurztraminer | Alsace-Colmar-INRA-open field | Colmar, Fr | RT-PCR | 11/07/2016 | ✗ | ✓ | |
| EVC53 | Gewurztraminer | Alsace-Colmar-INRA-open field | Colmar, Fr | RT-PCR | 29/08/2016 | ✗ | NT | |
| EVC53 | Gewurztraminer | Alsace-Colmar-INRA-open field | Colmar, Fr | RT-PCR | 22/09/2016 | ✓ | ✓ | |
| EVC60 | Gewurztraminer | Alsace-Colmar-INRA-open field | Colmar, Fr | RT-PCR | 20/06/2016 | ✗ | NT | |
| EVC60 | Gewurztraminer | Alsace-Colmar-INRA-open field | Colmar, Fr | RT-PCR | 11/07/2016 | ✗ | ✓ | |
| EVC60 | Gewurztraminer | Alsace-Colmar-INRA-open field | Colmar, Fr | RT-PCR | 29/08/2016 | ✗ | NT | |
| EVC60 | Gewurztraminer | Alsace-Colmar-INRA-open field | Colmar, Fr | RT-PCR | 22/09/2016 | ✓ | ✓ | |
| Tu1 | Nd | Alsace-Turckheim-Abandonned | Nd | RT-PCR | 30/05/2017 | ✗ | NT | |
| Tu2 | Nd | Alsace-Turckheim-Abandonned | Nd | RT-PCR | 30/06/2017 | ✗ | NT | |
| Tu3 | Nd | Alsace-Turckheim-Abandonned | Nd | RT-PCR | 30/07/2017 | ✓ | NT | |
| Win1 | Nd | Alsace-Wintzenheim-ResDur | Nd | RT-PCR | 30/05/2017 | ✗ | NT | |
| Win2 | Nd | Alsace-Wintzenheim-ResDur | Nd | RT-PCR | 30/06/2017 | ✗ | NT | |
| Win3 | Nd | Alsace-Wintzenheim-ResDur | Nd | RT-PCR | 30/07/2017 | ✓ | NT | |
| Open field vs. Greenhouse | EVC49 | Gewurztraminer | Alsace-Colmar-INRA-open field | Colmar, Fr | RT-PCR | 22/09/2016 | ✓ | ✓ |
| EVA4 | Gewurztraminer | Alsace-Colmar-INRA-open field | Colmar, Fr | RT-PCR | 22/09/2016 | ✓ | ✓ | |
| EVA13 | Gewurztraminer | Alsace-Colmar-INRA-open field | Colmar, Fr | RT-PCR | 22/09/2016 | ✓ | ✓ | |
| EVA16 | Gewurztraminer | Alsace-Colmar-INRA-open field | Colmar, Fr | RT-PCR | 22/09/2016 | ✓ | ✓ | |
| EVA20 | Gewurztraminer | Alsace-Colmar-INRA-open field | Colmar, Fr | RT-PCR | 22/09/2016 | ✓ | ✓ | |
| EVA24 | Gewurztraminer | Alsace-Colmar-INRA-open field | Colmar, Fr | RT-PCR | 22/09/2016 | ✓ | ✓ | |
| EVA49 | Gewurztraminer | Alsace-Colmar-INRA-open field | Colmar, Fr | RT-PCR | 22/09/2016 | ✓ | ✓ | |
| A | Nd | Alsace-Colmar-INRA-open field | Nd | RT-PCR | 27/09/2016 | ✓ | ✓ | |
| B | Nd | Alsace-Colmar-INRA-open field | Nd | RT-PCR | 27/09/2016 | ✓ | ✓ | |
| C | Nd | Alsace-Colmar-INRA-open field | Nd | RT-PCR | 27/09/2016 | ✓ | ✓ | |
| D | Nd | Alsace-Colmar-INRA-open field | Nd | RT-PCR | 27/09/2016 | ✓ | ✓ | |
| Kober 5BB healthy | Na | Alsace-Colmar-INRA-Greenhouse | Grau du roi, Fr | RT-PCR | 27/09/2016 | ✓ | ✓ | |
| Kober 5BB GFLVinf1 | Na | Alsace-Colmar-INRA-Greenhouse | Grau du roi, Fr | RT-PCR | 27/09/2016 | ✗ | ✓ | |
| Kober 5BB GFLVinf2 | Na | Alsace-Colmar-INRA-Greenhouse | Grau du roi, Fr | RT-PCR | 27/09/2016 | ✗ | ✓ | |
| Kober 5BB GFLVinf3 | Na | Alsace-Colmar-INRA-Greenhouse | Grau du roi, Fr | RT-PCR | 27/09/2016 | ✓ | ✓ | |
| Gw cl643 | Gewurztraminer | Alsace-Colmar-INRA-Greenhouse | Grau du roi, Fr | RT-PCR | 27/09/2016 | ✗ | ✓ | |
| Chard cl131 | Chardonnay | Alsace-Colmar-INRA-Greenhouse | Grau du roi, Fr | RT-PCR | 27/09/2016 | ✗ | ✓ | |
| ENTAV-E39 | 11R-cl237 | Alsace-Colmar-INRA-Greenhouse | Grau du roi, Fr | RT-PCR | 27/09/2016 | ✗ | ✓ | |
| ENTAV-E173 | Grenache-cl435 | Alsace-Colmar-INRA-Greenhouse | Grau du roi, Fr | RT-PCR | 27/09/2016 | ✗ | ✓ | |
| ENTAV Kober 5BB cl114 | Na | Alsace-Colmar-INRA-Greenhouse | Grau du roi, Fr | RT-PCR | 27/09/2016 | ✗ | ✓ | |
| Cramant N332 | Chardonnay | Alsace-Colmar-INRA-Greenhouse | Cramant, Fr | RT-PCR | 27/09/2016 | ✗ | ✓ | |
| Bennwhir BE/5-47 N79 | Gewurztraminer | Alsace-Colmar-INRA-Greenhouse | Bennwhir, Fr | RT-PCR | 27/09/2016 | ✗ | ✓ | |
| Chablis 39-1 N24 | Chardonnay | Alsace-Colmar-INRA-Greenhouse | Chablis, Fr | RT-PCR | 27/09/2016 | ✗ | ✓ | |
| Epidemiology | E | Nd | Alsace-Eguisheim | Nd | RT-PCR | 27/09/2016 | ✓ | ✓ |
| F | Nd | Alsace-Husseren les Chateaux | Nd | RT-PCR | 27/09/2016 | ✓ | ✓ | |
| G | Nd | Alsace-Voegtlinshoffen | Nd | RT-PCR | 27/09/2016 | ✓ | ✓ | |
| H | Nd | Alsace-Gueberschwihr | Nd | RT-PCR | 27/09/2016 | ✓ | ✓ | |
| I | Nd | Alsace-Grand cru Hatschbourg | Nd | RT-PCR | 27/09/2016 | ✓ | ✓ | |
| J | Nd | Alsace-Herrlisheim | Nd | RT-PCR | 27/09/2016 | ✓ | ✓ | |
| Mes | Nd | Cognac-Messac | Nd | RT-PCR | 01/11/2016 | ✗ | ✓ | |
| Ger | Nd | Cognac-Germignac | Nd | RT-PCR | 01/11/2016 | ✗ | ✓ | |
| Sal | Nd | Cognac-Salignac | Nd | RT-PCR | 01/11/2016 | ✗ | ✓ | |
| TT2017-73 | Nd | Burgundy-Villers la Faye | Nd | Illumina 2*150 | 11/09/2017 | ✓ | Na | |
| TT2017-74 | Nd | Burgundy-Villers la Faye | Nd | Illumina 2*150 | 11/09/2017 | ✓ | Na | |
| TT2017-75 | Nd | Burgundy-Villers la Faye | Nd | Illumina 2*150 | 11/09/2017 | ✓ | Na | |
| TT2017-76 | Nd | Burgundy-Villers la Faye | Nd | Illumina 2*150 | 11/09/2017 | ✓ | Na | |
| TT2017-77 | Nd | Burgundy-Villers la Faye | Nd | Illumina 2*150 | 11/09/2017 | ✓ | Na | |
| TT2017-78 | Nd | Burgundy-Villers la Faye | Nd | Illumina 2*150 | 11/09/2017 | ✗ | Na | |
| TT2017-79 | Nd | Burgundy-Villers la Faye | Nd | Illumina 2*150 | 11/09/2017 | ✓ | Na | |
| TT2017-80 | Nd | Burgundy-Villers la Faye | Nd | Illumina 2*150 | 11/09/2017 | ✓ | Na | |
| Superficial | Swab EVC53 | Na | Alsace-Colmar-INRA-open field | Colmar, Fr | RT-PCR | 27/09/2016 | ✓ | ✗ |
| Swab EVC60 | Na | Alsace-Colmar-INRA-open field | Colmar, Fr | RT-PCR | 27/09/2016 | ✗ | ✓ | |
| Swab EVC56 | Na | Alsace-Colmar-INRA-open field | Colmar, Fr | RT-PCR | 27/09/2016 | ✓ | ✓ | |
| Negative Swab | Na | Na | Na | RT-PCR | 27/09/2016 | ✓ | ✓ | |
| Fungi | Alternaria tenuissima | Gewurztraminer | Alsace-Colmar-INRA-open field | Na | RT-PCR | 27/09/2016 | ✗ | Na |
| Leptosphaerulina chartarum | Gewurztraminer | Alsace-Colmar-INRA-open field | Na | RT-PCR | 27/09/2016 | ✗ | Na | |
| Epicoccum nigrum | Gewurztraminer | Alsace-Colmar-INRA-open field | Na | RT-PCR | 27/09/2016 | ✗ | Na | |
| Aureobasidium pullulans | Gewurztraminer | Alsace-Colmar-INRA-open field | Na | RT-PCR | 27/09/2016 | ✗ | Na | |
| Cladosporium cladosporioides | Gewurztraminer | Alsace-Colmar-INRA-open field | Na | RT-PCR | 27/09/2016 | ✗ | Na | |
| Dothioraceae sp | Gewurztraminer | Alsace-Colmar-INRA-open field | Na | RT-PCR | 27/09/2016 | ✗ | Na | |
| Penicillium oxalicum | Gewurztraminer | Alsace-Colmar-INRA-open field | Na | RT-PCR | 27/09/2016 | ✗ | Na | |
| Cladosporium sp. | Gewurztraminer | Alsace-Colmar-INRA-open field | Na | RT-PCR | 27/09/2016 | ✗ | Na | |
| Fusarium equiseti | Gewurztraminer | Alsace-Colmar-INRA-open field | Na | RT-PCR | 27/09/2016 | ✗ | Na | |
| Cryptococcus magnus | Gewurztraminer | Alsace-Colmar-INRA-open field | Na | RT-PCR | 27/09/2016 | ✗ | Na | |
| Botrytis cinerea | Gewurztraminer | Alsace-Colmar-INRA-open field | Na | RT-PCR | 27/09/2016 | ✗ | Na | |
| Mucor circinelloides | Gewurztraminer | Alsace-Colmar-INRA-open field | Na | RT-PCR | 27/09/2016 | ✗ | Na | |
| Plasmopara viticola | Chardonnay | Alsace-Colmar-INRA-open field | Na | RT-PCR | 2006 | ✗ | Na | |
| Erysiphe necator | Na | Alsace-Colmar-INRA-open field | Na | RT-PCR | 2016 | ✗ | Na | |
| Guignardia bidwellii | Na | Alsace-Colmar-INRA-open field | Na | RT-PCR | 2015 | ✗ | Na |
Relevant information relative to samples used in this study are shown, comprising: section (describing the purpose of sample use), names, cultivars, and sampling location, origin of the sample, techniques used to detect GaTLV, sampling dates. Na, Not applicable; Nd, Not determined; NT, Not tested; ✓: detected, ✗: absence.