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. 2018 Aug 30;7(9):giy096. doi: 10.1093/gigascience/giy096

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© The Author(s) 2018. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 6: — sORF detection. (A) An sORF must contain a start codon and stop codon within a transcript and should be inside of a given length range (default 30 -150nt). Additionally, a ribosomal binding site must be detected between the TSS and the start codon. (B) An example from H. pylori 26695. The coverage of RNA-seq (fragmented libraries), TEX+, and TEX- (dRNA-seq) are shown as pink, blue, and green coverages, respectively. The TSS, transcript, and sORF are presented as blue, red, and green bars, respectively.