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. 2018 Jul 10;1:87. doi: 10.1038/s42003-018-0094-7

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© The Author(s) 2018

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 1 — Gene inflation in R. irregularis. a Rapidly expanded/contracted ortholog groups based on CAFE analysis. Total gene number of analyzed species and unassigned genes by Orthofinder analysis (species-specific single-copy genes) are described on the right side of the tree. Illustrations were modified from the resources distributed in the Togo picture gallery (licensed under CC-BY 4.0 ©Togo picture gallery). b The number of R. irregularis-specific single-copy genes having protein motifs. Minor motifs (<50 genes) were omitted from the figure (raw-data; Supplementary Data 6). c The proportion of genes among the species-specific single-copy genes having each repeat element. d Sixty-nine rapidly expanded orthologous groups (OGs). Green heat map shows the number of genes in each OG. Orange heat map indicates the proportion of genes with each repeat element. The OGs containing the protein tyrosine kinase domain are marked in red. e Rapidly expanded OGs based on z-score analysis. The colors have the same meaning as in (d). f The number of rapidly expanded ortholog genes having protein motifs. Minor motifs (<100 genes) are omitted from the figure (raw-data; Supplementary Data 6)