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. 2018 Jun 29;1:84. doi: 10.1038/s42003-018-0089-4

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© The Author(s) 2018

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 5 — Phylogeny and divergence time estimation by molecular clock analysis. Divergence times of seven Oryza species were calculated using the first codon positions of 3746 single-copy protein-coding genes. Tree topology is supported by 100% bootstrap values. The blue ellipses on the nodes indicate the 95% credibility intervals of the estimated posterior distributions of the divergence times. The red circles indicate the fossil calibration times used for setting the upper and lower bounds of the estimates. MYA million years ago