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. 2018 Aug 30;9:2093. doi: 10.3389/fmicb.2018.02093

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Copyright © 2018 Esmaeel, Miotto, Rondeau, Leclère, Clément, Jacquard, Sanchez and Barka.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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(A) Secondary metabolite gene clusters predicted in the genome of P. phytofirmans PsJN. These gene clusters have been predicted using Florine workflow (Esmaeel et al., 2016b). Each color of gene clusters represents a different class of metabolites. Clusters were located in chromosomes 1 or 2 and some clusters are present in both chromosomes. (B) Siderophore gene cluster located in chromosomes 2. Gene implicated in the synthesis are represented by arrows. The domain organization of the NRPS genes is shown below arrows. A, Adenylation domain; ^LC_L, condensation between 2 L-monomers; ^DC_L, condensation between D-monomer and L-monomer; E, Epimerization domain; T, Thiolation domain. Predicted amino acid specificity is shown under each A domain, Asp, aspartic acid; Ser, serine; hfOrn, hydroxyformylornithine.