Table 2.
1 g IF vs H/W 1 g GC |
BL-PFC hyp-g vs 1 g IF |
µg vs BL-PFC hyp-g |
µg vs 1 g IF |
BL-PFC hyp-g vs H/W 1 g GC |
µg vs H/W 1 g GC |
||
---|---|---|---|---|---|---|---|
differentially expressed transcripts | up-regulated | 748 | 6564 | 709 | 494 | 8170 | 3089 |
down-regulated | 3545 | 5118 | 1102 | 1220 | 9828 | 8721 | |
total number | 4293 | 11682 | 1811 | 1714 | 17998 | 11810 | |
differentially expressed annotated transcripts | up-regulated | 707 | 6159 | 669 | 457 | 7635 | 2852 |
down-regulated | 3458 | 4981 | 1046 | 1196 | 9593 | 8509 | |
total number | 4165 | 11140 | 1715 | 1653 | 17228 | 11361 |
Differential expression is defined as t-test p-value < 0.05; fold change ≤−1.3 or ≥ +1.3. The term “transcripts” refers to all 45034 transcripts of the array, whereas “annotated transcripts” refers to the 42947 transcripts that are annotated to a gene.