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. 2018 May 31;46(15):e90. doi: 10.1093/nar/gky433

Table 1.

Editing of endogenous gene transcripts by dCas13a-hADAR2d in S. pombe*

Target gene Position of target editing residue (A) a Num of mRNA molecules per cell bNum of G+C/total c RNA editing efficiency
tdh1 79 560 23/65 59%, 50%
act1 1566 180 19/65 19%, 12%
mel1 921 0.069 26/65 13%, 10%
ade6 1160 9.8 27/65 10%, 8%
ade6 1003 9.8 24/65 8%, 7%
ade6 622 9.8 28/65 Not detected
erp5 672 6.8 30/65 14%, 12%
mug45 530 0.24 26/65 Not detected
nmt1 648 340 25/65 Not detected

*crRNA–pRNA construct was designed for each target with derived optimal settings, i.e. pRNA with a length of 37 bp, and editing site located in pRNA region 6 bp away from crRNA–pRNA boundary. They were placed in the same plasmid (under rrk1 promoter) as described (Figure 2B).

aAccording to reference (34,35).

bWithin 65 bp flanking sequence of editing residue.

cDetected by Sanger sequencing (‘Materials and Methods’ section and Supplementary Figure S2).