Table 1. Reference Wolbachia genes.
Gene sequences from Wolbachia-infected hosts used to create the reference database for Magic-BLAST searches of SRA accessions to diagnose novel Wolbachia infections.
| Host Classification | ||||||||
|---|---|---|---|---|---|---|---|---|
| Phylum | Class | Order | Species | Supergroup | Strain | Accession number | Gene | Citation |
| Arthropoda | Arachnida | Trombidiformes | Bryobia praetiosa | B | – | JN572870.1 | wsp | Ros et al. (2012) |
| Diaea circumlita | A | wDiacir3 | AY486091.1 | wsp | Rowley, Raven & McGraw (2004) | |||
| Insecta | Coleoptera | Tribolium confusum | – | NFR114 | AB469356.1 | wsp | D Kageyama, S Narita, T Imamura and A Miyanoshita (2008, unpublished data) | |
| Tribolium confusum | – | – | DQ842337.1 | ftsZ | Baldo et al. (2006) | |||
| Dicladispa armigera | A | wDic | DQ243935.1 | groE | Wiwatanaratanabutr et al. (2009) | |||
| Diptera | Culex pipiens | B | – | DQ900650.1 | wsp | ND Djadid, N Daneshinia, S Gholizadeh and S Zakeri (2006, unpublished data) | ||
| Culex quinquefasciatus | B | – | AY462861.1 | wsp | Tsai et al. (2004) | |||
| Drosophila melanogaster | A | wMel | FJ403332.1 | wsp | YF Wang and Y Zheng (2008, unpublished data) | |||
| Drosophila simulans | A | wMel | DQ412101.1 | wsp | Mateos et al. (2006) | |||
| Protocalliphora sialia | B | wProtPA | AF448376.1 | wsp | Werren & Bartos (2001) | |||
| Culex quinquefasciatus | B | 22 | GU901159.1 | ftsZ | JC Rondan-Duenas, A Blanco, and CN Gardenal (2010, unpublished data) | |||
| Drosophila melanogaster | A | Canton-S | X71906.1 | ftsZ | Holden, Brookfield & Jones (1993) | |||
| Drosophila recens | A | – | U28174.1 | ftsZ | Werren, Zhang & Guo (1995) | |||
| Drosophila simulans | A | wHa | AY508998.1 | ftsZ | JWO Ballard (2003, unpublished data) | |||
| Drosophila simulans | A | wMa(Ma) | AY508999.1 | ftsZ | JWO Ballard (2003, unpublished data) | |||
| Aedes albopictus | A | wAlbA | DQ243927.1 | groE | Wiwatanaratanabutr et al. (2009) | |||
| Culex fuscocephala | B | wFusc | AJ511284.1 | groE | S Wiwatanaratanabutr and P Kittayapong (2002, unpublished data) | |||
| Drosophila simulans | A | – | AB002287.1 | groE | Masui, Sasaki & Ishikawa (1997) | |||
| Drosophila simulans | A | – | AB002288.1 | groE | Masui, Sasaki & Ishikawa (1997) | |||
| Drosophila tristis | A | – | AY563553.1 | groE | Haine, Pickup & Cook (2005) | |||
| Hymenoptera | Encarsia formosa | B | – | KC161951.1 | wsp | F Lu and MX Jiang (2012, unpublished data) | ||
| Muscidifurax uniraptor | A | – | DQ380857.1 | wsp | Kyei-Poku et al. (2006) | |||
| Nasonia giraulti | – | wNGirVA | AF448381.1 | wsp | Werren & Bartos (2001) | |||
| Nasonia vitripennis | – | wNvi-2 | KC161919.1 | wsp | F Lu and MX Jiang (2012, unpublished data) | |||
| Trichogramma cordubensis | B | Sib | AF245164.1 | wsp | Pintureau et al. (2000) | |||
| Diplolepis rosae | B | Type I | U83887.1 | ftsZ | Schilthuizen & Stouthamer, 1998 | |||
| Habrocytus bedeguaris | B | Type I | U83886.1 | ftsZ | Schilthuizen & Stouthamer, 1998 | |||
| Trichogramma n. spec. (nr. deion) | B | – | U59696.1 | ftsZ | Schilthuizen & Stouthamer, 1998 | |||
| Asobara tabida | – | – | AJ634749.1 | groE | Haine, Pickup & Cook (2005) | |||
| Lepidoptera | Bombyx mandarina | – | – | KJ659909.1 | wsp | Zha et al. (2014) | ||
| Acraea encedon | B | – | AJ130892.1 | ftsZ | Hurst & Jiggins (1999) | |||
| Ephestia kuehniella | A | Type II | U62126.1 | ftsZ | Schilthuizen, Honda & Stouthamer (1998) | |||
| Acraea pharsalus | B | – | AJ318481.1 | groE | Jiggins et al. (2002) | |||
| Ephestia cautella | A | – | AB002289.1 | groE | Masui, Sasaki & Ishikawa (1997) | |||
| Ephestia cautella | B | – | AB002290.1 | groE | Masui, Sasaki & Ishikawa (1997) | |||
| Orthoptera | Gryllus pennsylvanicus | B | – | U28195.1 | ftsZ | Werren, Windsor & Guo (1995) | ||
| Malacostraca | Isopoda | Chaetophiloscia elongata | – | – | AM087239.1 | groE | Wiwatanaratanabutr et al. (2009) | |
| Nematoda | Secementea | Spirurida | Dirofilaria repens | C | – | AJ252176.1 | wsp | Bazzocchi et al. (2000) |
| Litomosoides sigmodontis | D | – | AJ252177.1 | wsp | Bazzocchi et al. (2000) | |||
| Onchocerca gibsoni | C | – | AJ252178.1 | wsp | Bazzocchi et al. (2000) | |||
| Brugia malayi | D | – | AJ252061.1 | wsp | Bazzocchi et al. (2000) | |||
| Brugia pahangi | D | – | AJ252175.1 | wsp | Bazzocchi et al. (2000) | |||
| Dirofilaria immitis | C | – | AJ252062.1 | wsp | Bazzocchi et al. (2000) | |||
| Wuchereria bancrofti | D | – | AF285273.1 | groE | S Salahuddeen and TB Nutman (2000, unpublished data) | |||