Table 1. Multiplet frequencies for three hypothetical experiments in which human and mouse cells are mixed equally.
Experiment | Human droplets | Mouse droplets | Non-empty droplets | Human and mouse droplets | Multiplet freq | Twice cross celltype freq |
---|---|---|---|---|---|---|
1 | 2,005 | 2,005 | 4,000 | 10 | 0.005 | 0.005 |
2 | 2,050 | 2,050 | 4,000 | 100 | 0.049 | 0.050 |
3 | 2,500 | 2,500 | 4,000 | 1,000 | 0.425 | 0.500 |
Notes:
The multiplet frequencies calculated using the exact method described here (column multiplet freq) are very similar to those obtained simply by multiplying by two the fraction of non-empty droplets that contain cells of both types (column twice cross celltype freq). However, the two methods are slightly different at higher multiplet frequencies, since the latter method fails to account for multiplets that have more than two cells.