Table 4.
Sample ID | Epitope 1 | Epitope 2 | Epitope 3 | Epitope 4 | Epitope 5 | Epitope 6 |
---|---|---|---|---|---|---|
BD18 | TNEELKKLGMV (V16) | EGLDMEALF (V12) | KTSKGMTKVGR (V15) | FGQSIKCVA (V8) | QSIKCVAQH (V7) | KGDVPNPCDW (V10) |
BD19 | SHEELKKLGML (V1) | DGFDRDALF (V1) | KSSHGMGKVGK (V1) | FAQSLVCVL (V1) | QSLVCVLMK (V1) | KTSIPNPCKW (V1) |
BD20, 21 | SDNELDTLGLL (V4) | PDLDKNRLF (V2) | LTSHGMGKIGR (V3) | LAASIKCVS (V3) | ASIKCVSQH (V20)a | KPSIPNPCDW (V19) |
BD24 | SDSELETLGML (V26)a | PDPDKQRLF (V8) | LTSKAMSTVGK (V11) | FAQSIYCVA (V21) | QSIYCVANN (V10) | KGDVPNPCQW (V8) |
BD25 | SDDELRKLGML (V15) | DGFDRDALF (V1) | KSSHGMGKVGR (V14) | FVESIMCVI (V14) | ESIMCVIKK (V14) | KEDVPNPCDW (V3) |
CD16 | SHEELKKLGML (V1) | DGFDRDALF (V1) | KSSHGMGKVGK (V1) | FAQSLVCVL (V1) | QSLVCVLMK (V1) | KTSIPNPCKW (V1) |
CD17 | SDNELDTLGLL (V4) | PDLDKNRLF (V2) | LTSHGMGKIAR (V25) | LAASIKCVS (V3) | ASIKCVSHH (V3) | KPSVPNPCDW (V2) |
CD28 | TEEELKKMGMV (V27) | EGFDKEKLF (V22) | KSSKSMGIVGR (V24) | FVQSIMCVI (V20) | QSIMCVINK (V21) | VNDIPNPCKW (20) |
Newly identified epitope sequences are in boldface.
Epitope variant number is found in (). Original epitope variant numbers are defined in Pelle et al. 2011. Epitope variant numbers are separate from protein variant numbers.