Table 6.
Diversity within the individual antigens
| TpAg | No. nucleotide variants/No. sequences obtained | No. protein variants/No. of sequences obtained. | No. protein variants/No. nucleotide variants | No. non-synonymous SNP locations/Total No. SNP locations |
|---|---|---|---|---|
| Tp1 | 8/11 (0.73) | 8/11 (0.73) | 8/8 (1) | 16/19 (0.84) |
| Tp2 | 7/9 (0.78) | 7/9 (0.78) | 7/7 (1) | 92/220 (0.42) |
| Tp3 | 13/24 (0.54) | 9/24 (0.38) | 9/13 (0.69) | 12/26 (0.46) |
| Tp4 | 13/24 (0.54) | 6/24 (0.25) | 6/13 (0.46) | 5/36 (0.14) |
| Tp5 | 6/16 (0.38) | 3/16 (0.19) | 3/6 (0.5) | 3/26 (0.12) |
| Tp6 | 13/23 (0.57) | 2/23 (0.09) | 2/13 (0.15) | 1/23 (0.04) |
| Tp7 | 9/25 (0.36) | 5/25 (0.20) | 3/9 (0.33) | 4/33 (0.12) |
| Tp8 | 12/22 (0.55) | 7/22 (0.32) | 7/12 (0.58) | 6/19 (0.32) |
| Tp9 | 28/37 (0.76) | 27/37 (0.73) | 27/28 (0.96) | NAa |
| Tp10 | 13/22 (0.59) | 6/22 (0.27) | 6/13 (0.46) | 7/24 (0.29) |
a
Due to extensive gene diversity, it was not feasible to conduct this analysis.
Numbers in bold indicate the top three most diverse TpAg per group.