Key resources table.
| Reagent type (species) or resource |
Designation | Source or reference | Identifiers | Additional information |
|---|---|---|---|---|
| Genetic reagent (Mus musculus; Male) |
Tie2-GFP | The Jackson Laboratory |
Stock No: 003658; RRID:IMSR_JAX:003658 |
|
| Genetic reagent (M. musculus; Male) |
Tie2-Cre | The Jackson Laboratory |
Stock No: 008863 | |
| Genetic reagent (M. musculus; Male) |
R26-Tcf/Lef-LSL- H2B-GFP-6xMYC |
PMID: 28803732 | ||
| Antibody | anti-CD11b BV421 (rat monoclonal) |
Biolegends | Cat No: 101235; RRID:AB_10897942 |
1:1000 |
| Antibody | anti-ICAM2 (rat monoclonal) |
BD Biosciences | Cat No: 553326 | 1:300 |
| Antibody | anti-6xMYC (chicken polyclonal) |
PMID: 24411735 | 1:10000 | |
| Antibody | anti-GLUT1 (rabbit polyclonal) |
Thermo Fisher Scientific |
RB-9052 | 1:500 |
| Antibody | anti-ERG (rabbit polyclonal) |
Cell Signaling | A7L1G | 1:500 |
| Antibody | anti-dopa decarboxylase (goat polyclonal) |
R and D Systems | AF3564 | 1:500 |
| Antibody | anti-ZIC3 (rabbit polyclonal) |
PMID: 23217714 | 1:50 | |
| Other | Alexa Fluor 594-conjugated GS Lectin |
Thermo Fisher Scientific |
L21416 | 1:200 |
| Peptide, recombinant protein |
Tn5 transposase | Illumina | FC-121–1030 | |
| Commercial assay or kit |
Worthington Papain Dissociation Kit |
Worthington Biochemical Corporation |
LK003160 | |
| Commercial assay or kit |
Rneasy Micro Plus Kit |
Qiagen | 74034 | |
| Commercial assay or kit |
Dneasy Blood and Tissue Kit |
Qiagen | 69504 | |
| Commercial assay or kit |
MinElute GelExtraction Kit |
Qiagen | 28604 | |
| Commercial assay or kit |
Agencourt AMPure XP beads |
Beckman Coulter | A63880 | |
| Commercial assay or kit |
EZ DNA Methylation-Direct Kit |
Zymo | D5021 | |
| Software, algorithm |
RSEM | PMID: 21816040 | RRID:SCR_013027 | |
| Software, algorithm |
DESeq2 | PMID: 25516281 | RRID:SCR_015687 | |
| Software, algorithm |
Bowtie2 | PMID: 22388286 | ||
| Software, algorithm |
MACS2 | PMID: 18798982 | ||
| Software, algorithm |
DiffBind | PMID: 22217937 | RRID:SCR_012918 | |
| Software, algorithm |
deepTools | PMID: 27079975 | ||
| Software, algorithm |
HOMER | PMID: 20513432 | ||
| Software, algorithm |
Monocle | PMID: 24658644 | ||
| Software, algorithm |
Methylpy | PMID: 26030523 | ||
| Software, algorithm |
BEDTools | PMID: 20110278 | RRID:SCR_006646 |