Table 1.
List of dictionaries used in DES-Mutation. References for the data sources indicated are as follows: Bioportal, ChEBI71, Entrez Gene72, MetaboLights73, IntEnz74, T3DB75, Industrially Important Enzymes76, GO77, KEGG78, Reactome79, PANTHER80, UniPathways81, NCBI Taxonomy82, KOBAS83.
| Dictionary | Enriched Unique Terms in the KB | Source |
|---|---|---|
| Chemicals/Compounds | ||
| Antibiotics | 633 | pre-existing in DES |
| Chemical Entities of Biological Interest (ChEBI) | 19,988 | pre-existing in DES |
| Drugs (DrugBank) | 4,100 | updated |
| Lipids | 2,406 | pre-existing in DES |
| Toxins (T3DB) | 1,908 | pre-existing in DES |
| Functional Annotation | ||
| Biological Process (GO) | 7,716 | pre-existing in DES |
| Cellular Component (GO) | 1,913 | pre-existing in DES |
| Molecular Function (GO) | 2,640 | pre-existing in DES |
| Pathways (KEGG, Reactome, UniPathway, PANTHER) | 1,925 | pre-existing in DES |
| General | ||
| ATC Ontology (Bioportal) | 1,838 | newly compiled |
| DOID Ontology (Bioportal) | 5,147 | pre-existing in DES |
| EGO Ontology (Bioportal) | 1,047 | newly compiled |
| HP Ontology (Bioportal) | 5,285 | newly compiled |
| Human Anatomy | 3,345 | pre-existing in DES |
| ICD9 | 821 | newly compiled |
| ORDO Ontology (Bioportal) | 7,361 | newly compiled |
| PDO Ontology (Bioportal) | 286 | newly compiled |
| Genes/Proteins/Transcripts | ||
| Archaea Genes (EntrezGene) | 6,687 | pre-existing in DES |
| Bacteria Genes (EntrezGene) | 45,120 | pre-existing in DES |
| Fungi Genes (EntrezGene) | 19,173 | pre-existing in DES |
| Human Genes and Proteins (EntrezGene) | 25,617 | pre-existing in DES |
| Mutations (tmVar) | 63,413 | newly compiled |
| Viruses Genes (EntrezGene) | 6,203 | pre-existing in DES |
| Taxonomy | ||
| Archaea (NCBI Taxonomy) | 761 | pre-existing in DES |
| Bacteria (NCBI Taxonomy) | 13,496 | pre-existing in DES |
| Fungi (NCBI Taxonomy) | 7,162 | pre-existing in DES |
| Viruses (NCBI Taxonomy) | 4,883 | pre-existing in DES |