Table 3.
Prophages present in the analyzed D. solani genomes.
| D. solani strain | No. of the prophage sequence | Length (kb) | Sequence completeness | Positions in the D. solani genome | Groupa |
|---|---|---|---|---|---|
| IFB0099 | PR1 PR2 |
27 14.1 |
intact questionable |
2748142-2775153 4672375-4686494 |
I A III |
| IFB0158 | PR1 PR2 |
27.4 14.1 |
intact questionable |
637761-665201 3565525-3579644 |
I A III |
| IFB0221 | PR1 PR2 |
27.4 14.1 |
intact questionable |
637761-665201 4859798-4874569 |
I A N |
| IFB0223 | PR2 PR1 PR3 |
48.3 44.9 14.1 |
intact incomplete questionable |
2744993-2793313 432810-477786 4677009-4691128 |
I B II III |
| NCPPB4479T IPO 2222 | PR1 PR2 |
16 14.1 |
incomplete questionable |
2913332-2929416 4611857-4625976 |
n III |
| GBBC 2040 | PR1 PR2 |
26.9 14.1 |
incomplete questionable |
2905276-2932269 4604558-4618677 |
n III |
| MK10 | PR2 PR1 |
27.2 14.1 |
intact questionable | 2756228-2783473 159129-173256 |
I A III |
| MK16 | PR2 PR1 |
27.2 14.1 |
intact questionable | 2687323-2714567 159136-173255 |
I A III |
| D s0432-1 | PR2 PR1 PR3 |
27.4 44.9 14.1 |
intact incomplete questionable |
2732844-2760284 435970-480946 4643974-4658093 |
I A II III |
| RNS 08.23.3.1A | PR1 PR3 PR2 |
28.3 44.9 14.5 |
intact incomplete questionable |
649811-678182 3258604-3303580 2561220-2575779 |
I A II III |
| PPO 9019 | PR1 | 14.1 | questionable | 1622153-1636272 | III |
| PPO 9134 | PR1 PR2 |
12.3 14.1 |
questionable questionable |
965401-977759 4823112-4837231 |
n III |
| RNS 05.1.2A | PR4 PR5 PR6 PR1 PR2 PR7 PR3 |
23.5 34 31.5 11.4 15.2 19.4 20.8 |
intact intact intact incomplete incomplete incomplete questionable |
2062173-2085685 2397356-2431394 4377687-4409244 522314-533731 871014-886304 4482742-4502177 1782074-1802942 |
n n n n n n n |
| RNS 07.7.3B | PR1 PR2 |
14.1 13.1 |
questionable questionable |
1644970-1659089 3091451-3104564 |
III n |
a
Unique prophage sequences were marked with ‘n'.