Table 1.
List of loci associated with intramuscular fat content (IMF), their genomic location and nearest genes
| Marker ss ID (variant type) | Chr | Position | −log10P | −log10P after Bonferroni correction | Nearest genes (their distance from the marker in bp) | MAF | FDR |
|---|---|---|---|---|---|---|---|
| rs43284251 intergenic | 1 | 154894091 | 12.2 | 7.1 | GALNT15 (29068), DPH3 (110416), ANKRD28 (325755) | 0.426 | 2.6e-8 |
| rs109210955 intergenic | 6 | 39358026 | 16.3 | 11.2 | LAP3 (757999), MED28 (749185), FAM184B (685720), DCAF16 (603129), NCAPG (545975), LCORL (365914) | 0.221 | 2.4e-12 |
| rs41630030 intronic | 13 | 54540476 | 15.5 | 10.4 | ARFRP1 (14722), TNFRSF6B (12525), ENSBTAT00000045108, ENSBTAT00000052120 | 0.162 | 1.3e-11 |
| rs41642251 intergenic | 17 | 26689850 | 21.7 | 16.7 | PRAME (1567997), U1 (251068), | 0.106 | 2.6e-17 |
MAF, minor allele frequency; FDR, false discovery rate; GALNT15, polypeptide N-acetylgalactosaminyltransferase 15; LAP3, leucine aminopeptidase; MED28, mediator of RNA polymerase II transcription subunit 28; FAM184B, family with sequence similarity 184 member B; DCAF16, DDB1 and CUL4 associated factor 16; NCAPG, non-SMC condensin I complex subunit G; LCORL, ligand-dependent nuclear receptor corepressor-like protein; ARFRP1, ADP-ribosylation factor-related protein 1; TNFRSF6B, TNF receptor superfamily member 6b; PRAME, preferentially expressed antigen in melanoma; U1, splicesomal RNA.