Table 1.
Detailed information about the analyzed genes and SNPs along with the methods used
| Gene | Accession number | SNP | SNP variant | Primers | Endonuclease | Obtained alleles (bp) |
|---|---|---|---|---|---|---|
| TNNT2 | ENSSSCG00000023031 | c.294T>C (rs330309370) | splice region variant/synonymous variant | F CACGCCTCCTTCTGTTCATC R CAGCTCCTCCTCCTCCTTCT |
HpyCH4IV | T: 334 C: 255, 79 |
| FOXO1 | ENSSSCG00000009370 | c.*1395A>G (rs337841578) | 3′ prime UTR variant | F TCAGCAAGTTTTCCCTCTGTaCT R CCCCAGCTTAACTTTCCAGA |
HpyCH4III | A: 154 G: 131, 23 |
| TACC2 | ENSSSCG00000028063 | c.7837C>T p.Arg2613Cys (rs80840610) |
missense variant | F GCTGAGGTGTTCGTTGTGAA R TGCACGATTGACGCTTTTAG |
AluI | C: 200, 121, 56, 16 T: 200, 89, 56, 32, 16 |
| DEGS1 | ENSSSCG00000024484 | c.*250T>C (rs344988843) | 3′ prime UTR variant | F AGACGAGCCCCTCGTACAAT R GAACTCCCAGGCCTTTTCA |
HpyCH4IV | T: 361 C: 211, 150 |
SNP, single nucleotide polymorphism; TNNT2, troponin T2; FOXO1, forkhead box O1; TACC2, transforming acidic coiled-coil-containing protein 2; DEGS1, delta 4-desaturase, sphingolipid 1.