Table 2.

Number of differentially expressed genes (DEGs) up-regulated (Up) and down-regulated (Down) in tomato plants treated with Trichoderma, HA and/or Rhizoctonia.

Comparisons	DEGs	Up	Down
[P+T vs. P]	1,227	1,142	85
[P+HA vs. P]	–	–	–
[P+T+R vs. P+R]	1,142	630	512
[P+HA+R vs. P+R]	2,317	1,456	861

[T+P vs. P], plants treated with Trichoderma compared to control plants (water); [P+T+R vs. P+T], pathogen-infected plants treated with Trichoderma compared to untreated infected plants; [P+HA+R vs. P+R], infected plants treated with HA compared to untreated infected plants.