Table 1.

Genomic regions identified by genome-wide association analysis of resistance to clinical mastitis in Nordic Holstein cattle

BTA	Base position	Effect	–log10(p)	Region***	Gene	Annotation
3	92,927,352	−1.34	8.88	91,961,838~ 93,178,041	ENSBTAG00000010814 (28,361 bp)	intergenic
4	10,928,348	−2.39	11.48	10,113,846 ~  11,178,507	TFPI2 (107,131 bp)	intergenic
4	58490979*	1.44	9.44	57,757,451 ~  58,741,047	ENSBTAG00000020620 (233,286 bp)	intergenic
5	30,211,323	−1.54	11.71	29,850,270 ~  30,461,626	BCDIN3 (599 bp)	upstream
5	106371995*	− 1.52	9.23	105,444,242 ~  106,622,012	CCND2 (95,176 bp)	intergenic
6	88,729,872	2.78	38.97	88,479,895 ~  88,980,376	GC	intron
6	23469606*	1.63	12.53	23,219,637 ~  23,719,758	MANBA	intron
6	93131207**	2.05	12.63	92,131,530 ~  93,382,644	CCDC158 (72,869 bp)	intergenic
7	57,794,761	1.36	9.32	57,545,197 ~  58,044,816	ENSBTAG00000019739 (33,697)	intergenic
8	25,684,799	1.83	11.98	25,434,812 ~  25,935,079	ADAMTSL1	intron
9	80,007,099	−1.45	10.02	79,238,565 ~  80,257,157	NMBR (604,558 bp)	intergenic
10	51,191,670	−1.63	9.90	50,733,332 ~  51,441,800	MYO1E	intron
11	88,742,878	1.47	9.43	88,150,188 ~  88,993,125	ID2	intergenic
13	62,017,506	−1.95	19.82	61,295,534 ~  62,267,717	PDRG1 (2545 bp)	upstream
14	61,344,981	1.76	8.88	61,020,081 ~  61,594,984	ZFPM2	intron
16	47,836,093	−1.88	12.77	47,048,599 ~  48,086,099	ACOT7	intron
18	43,909,571	2.38	17.52	43,659,734 ~  44,159,716	ENSBTAG00000004994 (17,651 bp)	intergenic
19	43,038,655	−1.73	14.95	42,148,461 ~  43,288,858	STAT5A	intron
20	38,471,456	−2.88	20.57	38,221,493 ~  38,721,830	SPEF2	intron
23	11,477,905	1.53	13.58	11,204,757 ~  11,727,945	MDGA1 (52,973 bp)	intergenic
25	35,354,412	1.46	9.47	35,104,498 ~  35,604,430	CUX1	intron
26	20,463,679	1.41	9.44	20,214,011 ~  20,713,741	SLC25A28 (2425 bp)	downstream

^*The lead SNP was found in the second round

^**The lead SNP was found in the third round

^***The method to define the QTL interval can be found in Method