Table 4.
Putative causal genes for identified QTL affecting resistance to clinical mastitis
| QTL | Gene | Source* |
|---|---|---|
| 3: 91961838~ 93,178,041 | FAM151A | Gene analysis and RNA-seq |
| 4: 57757451~ 58,741,047 | IMMP2L | Gene analysis and MP |
| 5: 105444242~ 106,622,012 | FGF6 and/or CCND2 | Gene analysis and KEGG / Gene analysis, KEGG and nearest gene |
| 6: 23219637~ 23,719,758 | NFKB1 | Gene analysis, KEGG, GO, MP and RNA-seq |
| 6: 88479895~ 88,980,376 | GC | Gene analysis and MP |
| 6: 92131530~ 93,382,644 | NAAA and/or SHROOM3 | RNA-seq and gene analysis / RNA-seq and gene analysis |
| 11: 88150188~ 88,993,125 | ID2 | Gene analysis and MP |
| 13: 61295534~ 62,267,717 | CCM2L and/or HCK | Gene analysis, GO, MP and RNA-seq / Gene analysis, GO, MP and RNA-seq |
| 16: 47048599~ 48,086,099 | HES2 and/or ACOT7 and/or KCNAB2 | Gene analysis and RNA-seq / Gene analysis, nearest gene and RNA-seq / Gene analysis and RNA-seq |
| 19: 42148461~ 43,288,858 | KRT32 and/or DHX58 and/or KCNH4 and/or STAT5A and/or STAT3 | Gene analysis and RNA-seq / Gene analysis, GO, MP and RNA-seq / Gene analysis, MP and RNA-seq / Gene analysis, nearest gene, KEGG, GO and MP / Gene analysis, KEGG, MP and RNA-seq |
| 20: 38221493~ 38,721,830 | CAPSL and/or SPEF2 | Gene analysis and RNA-seq / Gene analysis nearest gene and GO |
| 25: 35104498~ 35,604,430 | ORAI2 / CUX1 | Gene analysis, MP and RNA-seq / Gene analysis, nearest gene and MP |
Note, * we used ‘/’ to separate the evidence for different genes, MP stands for mammalian phenotype database