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. 2018 Sep 7;13(9):e0203280. doi: 10.1371/journal.pone.0203280

Table 2. The profile of the top 20 up-regulated and down-regulated pathways in KEGG Orthologue database.

Type of regulation Pathway Rich factor Adjusted p-value Gene number Function description
Up-regulated Acute myeloid leukaemia 0.275 0.3628 11 Cancers
Axon guidance 0.186 0.3936 29 Development
B cell receptor signalling pathway 0.316 0.1962 12 Immune system
Bacterial invasion of epithelial cells 0.230 0.1962 23 Infectious diseases
Chemokine signalling pathway 0.222 0.1962 28 Immune system
Dopaminergic synapse 0.210 0.3432 22 Nervous system
Endocytosis 0.163 0.5257 46 Transport and catabolism
ErbB signalling pathway 0.205 0.5257 16 Signal transduction
Fc gamma R-mediated phagocytosis 0.241 0.1962 21 Immune system
Focal adhesion 0.205 0.1935 44 Cellular Process
Hedgehog signalling pathway 0.250 0.3432 14 Signal transduction Processing
Hedgehog signalling pathway—fly 0.257 0.5257 9 Signal transduction
Insulin signalling pathway 0.172 0.5257 30 Endocrine system
PI3K-Akt signalling pathway 0.163 0.5257 38 Signal transduction
Platelet activation 0.180 0.5257 27 Cancer
Prolactin signalling pathway 0.255 0.3936 12 Endocrine system
Proteoglycans in cancer 0.186 0.2138 42 Cancer
Regulation of actin cytoskeleton 0.206 0.1935 41 Cellular Process
Salmonella infection 0.221 0.2981 21 Disease
Shigellosis 0.242 0.1962 22 Disease
Down- regulated Adipocytokine signalling pathway 0.088 0.201 6 Endocrine system
alpha-Linolenic acid metabolism 0.182 0.030 6 Lipid metabolism
Arachidonic acid metabolism 0.182 0.002 10 Lipid metabolism
Arginine and proline metabolism 0.123 0.026 9 Amino acid metabolism
Ascorbate and aldarate metabolism 0.167 0.129 4 Carbohydrate metabolism
Citrate cycle (TCA cycle) 0.098 0.160 6 Carbohydrate metabolism
Ether lipid metabolism 0.122 0.085 6 Lipid metabolism
Fat digestion and absorption 0.161 0.085 5 Digestive system
Fatty acid degradation 0.084 0.173 7 Lipid metabolism
Glutathione metabolism 0.096 0.085 8 Metabolism
Glycolysis / Gluconeogenesis 0.069 0.160 10 Carbohydrate metabolism
Linoleic acid metabolism 0.235 0.002 8 Lipid metabolism
Pancreatic secretion 0.087 0.085 9 Digestive system
Parkinson’s disease 0.052 0.302 13 Neurodegenerative diseases
Protein digestion and absorption 0.094 0.224 5 Digestive system
Pyruvate metabolism 0.080 0.201 7 Carbohydrate metabolism
Starch and sucrose metabolism 0.087 0.201 6 Carbohydrate metabolism
Steroid hormone biosynthesis 0.120 0.348 3 Lipid metabolism
Valine, leucine and isoleucine degradation 0.094 0.085 8 Amino acid metabolism
Vascular smooth muscle contraction 0.067 0.201 9 Circulatory system