Table 2. De novo gene annotations.
Annotations were generated by the NCBI eukaryotic annotation pipeline, using existing gerbil transcripts, proteins, and RNA-Seq data from the Sequence Read Archive (SRA) as evidence.
| NCBI annotation | mean length (bp) |
median length (bp) |
minimal length (bp) |
maximum length (bp) |
|
|---|---|---|---|---|---|
| start_codon | 38,750 | ||||
| exon | 227,097 | 262 | 135 | 1 | 17,106 |
| intron | 201,876 | 3,803 | 1,312 | 30 | 452,462 |
| CDS | 38,750 | 1,809 | |||
| all transcripts | 40,519 | 2,708 | 2,212 | 55 | 99,751 |
| mRNA | 59,721 | 2,774 | 2,266 | 117 | 99,751 |
| misc_RNA | 487 | 2,678 | 2,449 | 211 | 10,553 |
| tRNA | 396 | 74 | 72 | 69 | 84 |
| lncRNA | 886 | 995 | 648 | 55 | 8,241 |
| gene | 23,273 | 31,095 | 14,417 | 69 | 753,783 |