Table 1.

Running time performance of SEDEF in single-core mode and multi-core mode on 80 Intel Xeon E7-4860 v2 cores at 2.60 GHz

	Human (hg19)			Mouse (mm8)
	Total	Seeding and extending	Chaining and aligning	Total	Seeding and extending	Chaining and aligning
1 core	10 h 30 min	7 h 33 min	2 h 57 m	13 h 7 min	7 h 53 min	5 h 14 min
80 cores	0 h 14 min	0 h 10 min	0 h 04 m	0 h 30 min	0 h 10 min	0 h 20 min