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Mismatches, clips and single-read maps of the data filtered with different tools
| NS_PE150 | Total map base (M) | Mismatched base (M) | Total map read (M) | Clip read (M) | Single- read map |
|---|---|---|---|---|---|
| Raw data | 3390 | 19.8 | 22.4 | 6.16 | 46025 |
| Fastp | 3102 | 10.6 | 21.2 | 0.30 | 271 |
| AfterQC | 3053 | 12.3 | 21.2 | 0.64 | 34099 |
| SOAPnuke | 2981 | 18.3 | 19.7 | 3.46 | 36888 |
| Trimmomatic | 3111 | 12.8 | 22.1 | 0.75 | 229111 |
| Cutadapt | 3287 | 19.8 | 22.4 | 1.05 | 46195 |
