Table 3.
Accuracy evaluation of Mashmap2 and Minimap2 to do an alignment-free computation of mapping boundaries
| Id | Recall scores |
Fraction of query bases mapped uniquely | Precisiona | |||
|---|---|---|---|---|---|---|
| Mashmap2 (%) | Minimap2 (%) | #True alignments | Mashmap2 (%) | Minimap2 (%) | Mashmap2 (%) | |
| D1 | 100 | 100% | 144 | 74.0 | 78.9 | 72.0 |
| D2 | 97.5 | 98.3 | 35 186 | 96.8 | 96.3 | 50.0 |
| D3 | 97.1 | 98.1 | 37 807 | 96.9 | 96.0 | 55.2 |
| D4 | 97.0 | 97.7 | 63 908 | 87.5 | 91.3 | 75.9 |
| D5 | 97.5 | 98.0 | 65 289 | 89.8 | 93.2 | 57.3 |
| D6 | 99.3 | 99.5 | 4349 | 89.9 | 84.6 | 34.8 |
Note: Recall was measured against the truth sets assumed (Section 3.1.2).
aFraction of mappings which satisfied alignment thresholds in Mashmap2.