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Run time of Ptolemy across three datasets
| Dataset | Genomes | Module | Wall clock (min:s) | MaxMem (Gb) | CPUs |
|---|---|---|---|---|---|
| MTBC | 24 | ||||
| E + R | 0:43 | 0.680 | 1 | ||
| SA | 11:35 | 1.35 | 4 | ||
| C | 0:03 | — | 1 | ||
| Yeast | 12 | ||||
| E + R | 0:45 | 0.694 | 1 | ||
| SA | 5:02 | 1.44 | 4 | ||
| CQ | 0:03 | — | 1 | ||
| Eco + Shig | 20 | ||||
| E + R | 0:42 | 0.632 | 1 | ||
| SA | 4:50 | 1.33 | 4 | ||
| CQ | 0:03 | — | 1 |
Note: Ptolemy is separated in three modules: extraction + repeat finder (E + R), syntenic anchors, (SA) and construction of the canonical quiver (CQ).
