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Comparing and contrasting the three popular types of analysis pipelines, and how they facilitate what we envision as the three most important qualities when facilitating algorithm development and testing
| Type | Zero Interfacing | Language flexibility | Lightweight |
|---|---|---|---|
| Standalone (Qiime, Mothur) | No | Depends | Depends |
| Workflows (Taverna, KNIME) | Yes | No | Depends |
| Superpipelines (Galaxy, Docker) | Yes | Yes | No |
