Table 3.

Summary of high quality SNPs by genotyping analysis using CottonSNP80K array.

Chr.	Total SNPs	Filtered SNPs	Chr. size (Mb)	Density of SNP (Kb/SNP)	PIC
A01	3500	2365	99.88	42.23	0.372
A02	1996	1410	83.45	59.18	0.349
A03	2466	1792	100.26	55.95	0.348
A04	1434	1055	62.91	59.63	0.362
A05	3384	2485	92.05	37.04	0.352
A06	4698	2525	103.17	40.86	0.287
A07	3070	2132	78.25	36.7	0.340
A08	7773	4967	103.63	20.86	0.286
A09	3621	2440	75	30.74	0.332
A10	2964	2035	100.87	49.57	0.330
A11	2897	1890	93.32	49.38	0.325
A12	3040	1994	87.48	43.87	0.355
A13	4340	2985	79.96	26.79	0.356
D01	2339	1852	61.46	33.19	0.359
D02	2985	2350	67.28	28.63	0.378
D03	1889	1321	46.69	35.34	0.263
D04	1272	1019	51.45	50.49	0.355
D05	2041	1596	61.93	38.8	0.339
D06	4037	3191	64.29	20.15	0.316
D07	3472	2617	55.31	21.13	0.326
D08	2898	2256	65.89	29.21	0.389
D09	2938	2147	51	23.75	0.296
D10	2130	1701	63.37	37.25	0.338
D11	1866	1409	66.09	46.91	0.335
D12	2562	1911	59.11	30.93	0.324
D13	2162	1615	60.53	37.48	0.322

Chr, chromosome; PIC, polymorphism information content.