Table 4. Fractions of A, T, G, and C at the First, Second, and Third Nucleotide Positions of the Codons in Each Primer Set and Supplier, Determined by Deep Sequencing.
first
nucleotide (%) |
second
nucleotide (%) |
third
nucleotide (%) |
|||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
primer set | supplier | A | T | G | C | A | T | G | C | A | T | G | C |
NNNa | 1 | 9 | 42 | 33 | 16 | 8 | 43 | 33 | 16 | 9 | 39 | 37 | 15 |
2 | 16 | 38 | 30 | 16 | 17 | 38 | 30 | 15 | 16 | 39 | 31 | 14 | |
3 | 21 | 28 | 32 | 19 | 28 | 19 | 26 | 27 | 22 | 30 | 27 | 21 | |
NNBb | 1 | 19 | 36 | 26 | 19 | 20 | 36 | 26 | 18 | 0 | 44 | 33 | 23 |
2 | 18 | 34 | 30 | 17 | 19 | 33 | 31 | 17 | 0 | 39 | 41 | 20 | |
3 | 21 | 26 | 29 | 24 | 24 | 24 | 30 | 22 | 0 | 36 | 36 | 28 |
In NNN, the expected fractions of A, T, G, and C were all 25%.
In NNB, the expected fractions of T, G, and C at the third position were all 33% and the expected fraction of A at the third position was 0%.