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. Author manuscript; available in PMC: 2018 Sep 12.
Published in final edited form as: Mucosal Immunol. 2018 Jan 24;11(3):727–740. doi: 10.1038/mi.2017.114

Table 3.

Pathways significantly altered in ileum of wild type and TLR4ΔIEC mice

Pathway Name p-value
WebGestalt analysis
    DNA replication 0.0087
    PPAR signaling pathway 0.0087
    Fructose and mannose metabolism 0.0391
    Vitamin digestion and absorption 0.0391
Pathway Express analysis
    Circadian rhythm 0.00008
    DNA replication 0.00081
    PPAR signaling pathway 0.00156
    Base excision repair 0.02190
Ingenuity Pathway analysis
    Cell Cycle Control of Chromosomal Replication 0.00004
    LPS/IL-1 Mediated Inhibition of RXR Function 0.00417
    Retinol Biosynthesis 0.00912
    Antigen Presentation Pathway 0.01202
    Bupropion Degradation 0.02042
    Estrogen Biosynthesis 0.02399
    Glutathione-mediated Detoxification 0.02399
    PPARα/RXRα Activation 0.02692
    Acetone Degradation I (to Methylglyoxal) 0.02692
    Renal Cell Carcinoma Signaling 0.03090
    Adenosine Nucleotides Degradation II 0.03981
    Glucocorticoid Biosynthesis 0.03981
    Mineralocorticoid Biosynthesis 0.03981
    Interferon Signaling 0.04266
    RAR Activation 0.04571
    Maturity Onset Diabetes of Young (MODY) Signaling 0.04786