Table 2.

List of candidate genes associated with the stable SNPs identified.

S. No.	Marker	Chromosome	Position	p	Marker_R2	Genetic Variance	Linked genes	Candidate genes (closest/nearby)	Species
1	Kukri_c12683_1309	1A	40	0	9	11.9	TRIAE_CS42_7AS_TGACv1_571804_AA1849960	BTB/POZ domain-containing protein At3g05675-like	Aegilops taushii
2	RAC875_c34757_180	2A	60	0	9.1	11.9	TRIAE_CS42_2AS_TGACv1_112656_AA0342940	Na+/H+ antiporter (NHX2)	T. aestivum
3	BobWhite_c48481_81	2A	21	0	7.3	11.9	TRIAE_CS42_2AS_TGACv1_113144_AA0352040	Vacuolar protein sorting-associated protein 54	Aegilops taushii
4	RAC875_c18463_156	2B	66	0	8.6	11.9
5	RAC875_c29913_139	2B	88	0	8.3	11.9	TRIAE_CS42_2DL_TGACv1_160628_AA0552420	D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like	Aegilops taushii
6	Kukri_rep_c104810_341	2B	64	0	7.4	11.9
7	Excalibur_c23723_141	2B	60	0	6.7	11.9	TRIAE_CS42_2BS_TGACv1_147153_AA0478820
8	Excalibur_c19649_1500	2B	78	0	6.5	3.4	TRIAE_CS42_2BL_TGACv1_130672_AA0415740	BEACH domain-containing protein C2	Aegilops taushii
9	Kukri_c14902_1112	2D	67	0	9.3	11.9
10	Ku_c19185_1569	2D	40	0	8.1	10.2	TRIAE_CS42_2DL_TGACv1_159449_AA0538480
11	IAAV1375	5A	21	0	6.6	11.9	TRIAE_CS42_5AL_TGACv1_377519_AA1247650	Probable UDP-arabinose 4-epimerase 1	Aegilops taushii
12	Excalibur_c7546_1286	6D	122	0	8.7	10.2	TRIAE_CS42_6DL_TGACv1_526968_AA1696350
13	wsnp_Ex_c5268_9320618	7B	120	0	10.4	11.9	TRIAE_CS42_7BL_TGACv1_578120_AA1889690	Zinc finger CCCH domain-containing protein 13	Brachpodium
14	wsnp_Ex_c8400_14157318	7B	120	0	9.5	10.2	TRIAE_CS42_7BL_TGACv1_579256_AA1905850	NF-X1-type zinc finger protein NFXL1-like	Aegilops taushii
15	BS00004376_51	7B	130	0	7	3.4	TRIAE_CS42_7BL_TGACv1_577483_AA1876500	TaMYB59 MYB-related protein	T. aestivum
16	RAC875_c34939_963	7B	140	0	6.9	3.4	TRIAE_CS42_7BL_TGACv1_578066_AA1888730
17	wsnp_Ex_c24135_33382700	UN	1	0	9.9	11.9	TRIAE_CS42_2BL_TGACv1_131885_AA0433240	Protein IQ-DOMAIN 32	Brachpodium