Table 3.
Effector candidates in Fusarium oxysporum (Fo) and F. oxysporum f. sp. cepae (Foc) genomes. Numbers also shown for publically available Fo isolate Fo47 and F. oxysporum. f. sp. lycopersici (Fol) isolate 4287 genomes. Number of genes encoding putative effector candidates (A), in secondary metabolite clusters (B), or within 2 Kb of a mimp sequence are reported (B) along with numbers of secondary metabolite clusters (C).
| Organism | Foc | Foc | Foc | Fo | Fo | Fo | Fo | Fo | Fol |
|---|---|---|---|---|---|---|---|---|---|
| Isolate | Fus2 | 125 | A23 | A13 | A28 | CB3 | PG | Fo47 | 4287 |
| (A) Effector candidates: | |||||||||
| Secreted & EffectorP | 355 | 357 | 355 | 364 | 346 | 357 | 337 | 291 | 351 |
| Secreted CAZYmes | 386 | 386 | 387 | 397 | 376 | 383 | 381 | 382 | 386 |
| (B) Secondary metabolites: | |||||||||
| Total gene clusters | 50 | 46 | 46 | 49 | 48 | 44 | 45 | 47 | 49 |
| Genes in clusters | 703 | 559 | 561 | 626 | 656 | 604 | 638 | 705 | 701 |
| (C) Mimps | |||||||||
| Mimps in genome | 153 | 140 | 136 | 55 | 35 | 30 | 51 | 25 | 142 + 16* |
| Genes in 2 Kb of Mimp | 155 | 95 | 88 | 49 | 36 | 32 | 43 | 24 | 108 |
| Secreted genes in 2 Kb of Mimp | 31 | 24 | 20 | 9 | 5 | 1 | 3 | 3 | 22 |
*additional mimps located in non-scaffolded Fol contigs.