Table 3.
Sequencing statistics of two extreme bulks for low/high caffeine and statistics of SNPs discovery and analysis
| Parameters | Low‐caffeine bulk | High‐caffeine bulk |
|---|---|---|
| No. of individuals | 18 | 18 |
| Average content (% dmb) | 1.03 | 1.48 |
| Total of reads after trimmed (#) | 230 140 744 | 324 14 616 |
| Average coverage (×) | 28 | 40 |
| GC content (%) | 36 | 36 |
| Average Phred score | 37 | 37 |
| Average length after trim (bp) | 147 | 147 |
| No. of variant called in each bulk against the reference | 513 899 | 792 617 |
| No. of variant between two bulks | 18 469 | |
| No. of nonsynonymous between two bulks | 1444 | |
| No. of CDS | 1086 | |
| No. of genes with KEGG pathways | 189 | |
| No. of unique KEGG pathways | 70 | |
| No. of unique enzymes | 80 | |