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. 2018 Sep 4;9:2077. doi: 10.3389/fmicb.2018.02077

Table 1.

Strains used in this study, source of isolation and accession numbers of the available genomes.

Species Strain Source Acc. No. Genome Species Strain Source Acc. No. Genome
A. acticola KCTC 52212T Seawater NAa A. mytili T234 Seawater PDJW00b
A. anaerophilus DSM 24636T Estuarine sediment PDKO00b A. nitrofigilis DSM7299T Marshland plant NC014166c
IR-1 Utsira aquifer NZ_JXXG00c A. pacificus DSM 25018T Seawater NAa
A. aquimarinus CECT 8442T Mediterranean Sea NXIJ00b A. skirrowii LMG 6621T Diarrheic lamb NXIC00b
A. bivalviorum CECT 7835T Mussels PDKM00b F28 Wild pig PDJT00b
F118-4 Mussels PDKL00b A. suis CECT 7833T Pork meat NREO00b
A. butzleri RM4018T Human (Clinical) NC_009850c A. thereius LMG 24486T Aborted pig foetus LLKQ01c
ED1 Microbial fuel cell NC_017187c DU22 Duck cloaca LCUJ01c
A. canalis F138-33 Oyster PNCe NWVW01b A. trophiarum LMG 25534T Piglet feces PDKD00b
SH-4D_Col1 Unknown FUYO00c CECT 7650 Chicken cloacal swab PDJS00b
A. cibarius LMG 21996T Broiler, skin NZ_JABW00c A. venerupis CECT 7836T Clams NREP00b
A. cloacae CECT 7834T Sewage NXII00b Arcobacter sp. L Microbial fuel cell NC_017192c
F26 Mussels PDJZ00b AF1028 Human feces JART01c
A. cryaerophilus LMG 24291T Aborted bovine foetus NXGK00b CAB Marine Go0012496d
A. defluvii CECT 7697T Sewage NXIH00b LA11 Marine BDIR01c
A. ebronensis CECT 8441T Mussels PDKK00b LPB0137 Environmental CP019070c
CECT 8993 Seawater PDKJ00b
A. ellisii CECT 7837T Mussels NXIG00b A. aquaticus W112-28 Freshwater PNCe PDKN00b
A. faecis LMG 28519T Human septic tank NZ_JARS00c A. caeni RW17-10 Recycled wastewater MUXE00b
A. halophillus DSM 18005T Hypersaline lagoon PDJY00b A. hispanicus FW-54 Wastewater PDKI00b
F166-45 Oyster PNCe PDJY00b A. lacus RW43-9 Recycled wastewater MUXF00b
A. lanthieri LMG 28516T Pig manure JARU01c A. mediterraneus F156-34 Mussels Alfacs Bay NXIE00b
LMG 28517 Dairy cattle manure JARV01c A. miroungae 9Antf Cloaca elephant seal PDKH00b
A. lekithochrous CECT 8942T Great scallop larvae NZ_MKCO00b A. neptunis F146-38 Mussels Alfacs Bay PDKG00b
LMG 28652 Abalon PZYW00c A. porcinus LMG 24487T Aborted pig foetus LCUH01c
A. marinus CECT 7727T Seawater NXAO01b A. ponticus F161-33 Cockle Alfacs Bay PDKF00b
F140-37 Clams Alfacs Bay NWVX01b A. salis F155-33 Oyster PNCe PDKE00b
A. molluscorum CECT 7696T Mussels NZ_NXFY00b A. viscosus F142-34g Mussels PNCe PDKC00b
F91 Mussels PDJX00b A. vitoriensis FW59g Wastewater PDKB00b
A. mytili CECT 7386T Mussels NXID00b Arcobacter sp. F2176 Mussels PDJV00b

aGenome not available; bGenome sequenced in this study; cGenome obtained from NCBI database; dGenome obtained from JGI Gold atabase; ePNC means PobleNou Channel, which is a freshwater channel heavily (geometric mean of E. coli counts 4.1 × 104 c.f.u./100ml) contaminated with wastewater where shellfish were exposed for 72h (Salas-Massó et al., 2016, 2018). fThis strain was obtained from F.J. García from the Laboratorio Central de Veterinaria de Algete, MAGRAMA, Madrid, Spain; gThese strains were recovered at the Faculty of Pharmacy, University of the Basque Country (UPV-EHU), Vitoria-Gasteiz, Spain, by R. Alonso, I. Martinez-Malaxetxebarria and A. Fernández-Astorga.