Table 1.
Species | Strain | Source | Acc. No. Genome | Species | Strain | Source | Acc. No. Genome |
---|---|---|---|---|---|---|---|
A. acticola | KCTC 52212T | Seawater | NAa | A. mytili | T234 | Seawater | PDJW00b |
A. anaerophilus | DSM 24636T | Estuarine sediment | PDKO00b | A. nitrofigilis | DSM7299T | Marshland plant | NC014166c |
IR-1 | Utsira aquifer | NZ_JXXG00c | A. pacificus | DSM 25018T | Seawater | NAa | |
A. aquimarinus | CECT 8442T | Mediterranean Sea | NXIJ00b | A. skirrowii | LMG 6621T | Diarrheic lamb | NXIC00b |
A. bivalviorum | CECT 7835T | Mussels | PDKM00b | F28 | Wild pig | PDJT00b | |
F118-4 | Mussels | PDKL00b | A. suis | CECT 7833T | Pork meat | NREO00b | |
A. butzleri | RM4018T | Human (Clinical) | NC_009850c | A. thereius | LMG 24486T | Aborted pig foetus | LLKQ01c |
ED1 | Microbial fuel cell | NC_017187c | DU22 | Duck cloaca | LCUJ01c | ||
A. canalis | F138-33 | Oyster PNCe | NWVW01b | A. trophiarum | LMG 25534T | Piglet feces | PDKD00b |
SH-4D_Col1 | Unknown | FUYO00c | CECT 7650 | Chicken cloacal swab | PDJS00b | ||
A. cibarius | LMG 21996T | Broiler, skin | NZ_JABW00c | A. venerupis | CECT 7836T | Clams | NREP00b |
A. cloacae | CECT 7834T | Sewage | NXII00b | Arcobacter sp. | L | Microbial fuel cell | NC_017192c |
F26 | Mussels | PDJZ00b | AF1028 | Human feces | JART01c | ||
A. cryaerophilus | LMG 24291T | Aborted bovine foetus | NXGK00b | CAB | Marine | Go0012496d | |
A. defluvii | CECT 7697T | Sewage | NXIH00b | LA11 | Marine | BDIR01c | |
A. ebronensis | CECT 8441T | Mussels | PDKK00b | LPB0137 | Environmental | CP019070c | |
CECT 8993 | Seawater | PDKJ00b | |||||
A. ellisii | CECT 7837T | Mussels | NXIG00b | ‘A. aquaticus’ | W112-28 | Freshwater PNCe | PDKN00b |
A. faecis | LMG 28519T | Human septic tank | NZ_JARS00c | ‘A. caeni’ | RW17-10 | Recycled wastewater | MUXE00b |
A. halophillus | DSM 18005T | Hypersaline lagoon | PDJY00b | ‘A. hispanicus’ | FW-54 | Wastewater | PDKI00b |
F166-45 | Oyster PNCe | PDJY00b | ‘A. lacus’ | RW43-9 | Recycled wastewater | MUXF00b | |
A. lanthieri | LMG 28516T | Pig manure | JARU01c | ‘A. mediterraneus’ | F156-34 | Mussels Alfacs Bay | NXIE00b |
LMG 28517 | Dairy cattle manure | JARV01c | ‘A. miroungae’ | 9Antf | Cloaca elephant seal | PDKH00b | |
A. lekithochrous | CECT 8942T | Great scallop larvae | NZ_MKCO00b | ‘A. neptunis’ | F146-38 | Mussels Alfacs Bay | PDKG00b |
LMG 28652 | Abalon | PZYW00c | ‘A. porcinus’ | LMG 24487T | Aborted pig foetus | LCUH01c | |
A. marinus | CECT 7727T | Seawater | NXAO01b | ‘A. ponticus’ | F161-33 | Cockle Alfacs Bay | PDKF00b |
F140-37 | Clams Alfacs Bay | NWVX01b | ‘A. salis’ | F155-33 | Oyster PNCe | PDKE00b | |
A. molluscorum | CECT 7696T | Mussels | NZ_NXFY00b | ‘A. viscosus’ | F142-34g | Mussels PNCe | PDKC00b |
F91 | Mussels | PDJX00b | ‘A. vitoriensis’ | FW59g | Wastewater | PDKB00b | |
A. mytili | CECT 7386T | Mussels | NXID00b | Arcobacter sp. | F2176 | Mussels | PDJV00b |
aGenome not available; bGenome sequenced in this study; cGenome obtained from NCBI database; dGenome obtained from JGI Gold atabase; ePNC means PobleNou Channel, which is a freshwater channel heavily (geometric mean of E. coli counts 4.1 × 104 c.f.u./100ml) contaminated with wastewater where shellfish were exposed for 72h (Salas-Massó et al., 2016, 2018). fThis strain was obtained from F.J. García from the Laboratorio Central de Veterinaria de Algete, MAGRAMA, Madrid, Spain; gThese strains were recovered at the Faculty of Pharmacy, University of the Basque Country (UPV-EHU), Vitoria-Gasteiz, Spain, by R. Alonso, I. Martinez-Malaxetxebarria and A. Fernández-Astorga.